PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0055400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family AP2
Protein Properties Length: 452aa    MW: 48817.9 Da    PI: 7.2622
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0055400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.98.8e-1296152155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Spipo12G0055400  96 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 152
                      57*******************5444.2455536655.779999**************98 PP
2AP251.62.4e-16197246355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GV+++++ grW A+I  +     +k  +lg+fgt+eeAa+a++ a+ k++g
  Spipo12G0055400 197 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTEEEAAEAYDIAAIKFRG 246
                      9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-996152IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-1596162IPR016177DNA-binding domain
CDDcd000181.13E-1796162No hitNo description
SMARTSM003802.5E-2397166IPR001471AP2/ERF domain
PROSITE profilePS5103217.47797160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1297161IPR001471AP2/ERF domain
PRINTSPR003671.7E-698109IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-18195256IPR016177DNA-binding domain
CDDcd000182.38E-22195256No hitNo description
SMARTSM003803.4E-32196260IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-18196255IPR001471AP2/ERF domain
PROSITE profilePS5103219.164196254IPR001471AP2/ERF domain
PfamPF008475.8E-11197246IPR001471AP2/ERF domain
PRINTSPR003671.7E-6236256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MVAAEGREDL SSGPKLEDFL GGVGEPLGRF SGDSATAQPE AGGGGIYDSD LKSIAAGFLR  60
CPADQLEPES KTKAAGAAEA VPEQKKAVDT FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR  120
REGQSRKGRQ GGYDKEEKAA RAYDLAALKY WGPTTTTNFP VSNYEKELEE MKNMTRQEFV  180
ASLRRKSSGF SRGVSMYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFGTE EEAAEAYDIA  240
AIKFRGLNAV TNFDMSRYDV KSILASNLPI GGMSGRTPTK AADSSSSSSD ASKQVDGRDL  300
DLTGGGGGSS ANQLFALPLR HDQQHHQQHH DYWSLLALHH QQAPPHQGQD MNACFDLYSS  360
GVNVDFSSAT VLLNGGGMVQ QQHQQPQLGQ SAAWSTPPYA TAAAMGNAYE SSGYGGAWVP  420
PAPSSSSSMH AYQQAVKSSM GFFQTPIFGI E*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001290493.11e-177AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-135AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A3Q9X7L71e-176A0A3Q9X7L7_ELAGV; Baby boom protein
STRINGXP_008803593.11e-176(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-130AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]