PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0049400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family AP2
Protein Properties Length: 316aa    MW: 34440 Da    PI: 8.2929
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0049400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.21.3e-1057113255
              AP2   2 gykGV.rwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GV rw++++gr++A+++d  s+ +  k+k  + g ++ +e Aa a++ a++k++g
  Spipo12G0049400  57 AYRGVtRWHRWTGRFEAHLWDkESWsDSlKKKGRQ-GAYDDEEAAAHAYDLAALKYWG 113
                      69*******************99996666556655.99***9**************98 PP
2AP252.21.5e-16156207155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Spipo12G0049400 156 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 207
                      89****99**********99966...3.6*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-1356123IPR016177DNA-binding domain
PfamPF008472.1E-657113IPR001471AP2/ERF domain
PROSITE profilePS5103218.50557121IPR001471AP2/ERF domain
SMARTSM003801.6E-1657127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-1157122IPR001471AP2/ERF domain
CDDcd000185.16E-22156217No hitNo description
SuperFamilySSF541714.25E-18156217IPR016177DNA-binding domain
PfamPF008473.6E-12156207IPR001471AP2/ERF domain
SMARTSM003805.9E-26157221IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-18157216IPR001471AP2/ERF domain
PROSITE profilePS5103218.426157215IPR001471AP2/ERF domain
PRINTSPR003678.6E-5158169IPR001471AP2/ERF domain
PRINTSPR003678.6E-5197217IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGKKAPKCPA GSSDSSGGSI ENASSTASGG TGAGECLKVK RTRRSVPRES PSQRSSAYRG  60
VTRWHRWTGR FEAHLWDKES WSDSLKKKGR QGAYDDEEAA AHAYDLAALK YWGRDTVLNF  120
PLSTYHEKLK EMEGLSREEY IGSLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN  180
KYLYLGTYAT QEEAATAYDM AAIEYRGPNA VTNFDLSRYV QRLQPAAASD PSGGDLGQKA  240
GRASPLAEAP PTPPESDVRP PRRRCFPEDV QTCFEVLDVG DLTGGGGGAG GGGEDVVFED  300
VDAFLSTVFQ WELDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18490LKKKGRQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021643102.11e-122AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-102AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2G5DR681e-115A0A2G5DR68_AQUCA; Uncharacterized protein
TrEMBLA0A371FJW51e-115A0A371FJW5_MUCPR; AP2-like ethylene-responsive transcription factor (Fragment)
STRINGAquca_016_00348.11e-116(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.24e-86AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]