PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0038900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 158aa    MW: 18187.8 Da    PI: 8.012
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0038900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.51.9e-51181461129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrF Ptdeelv++yL+ kv +  +     + e+d++++ePw+Lp  +k +e+ewyf+s rd+ky+tg r+nrat sgyWkatgkd+ev+s
  Spipo12G0038900  18 LPPGFRFYPTDEELVTFYLAGKVFNGGFVGV-DMVEIDLNRCEPWELPDVAKLGEREWYFYSLRDRKYPTGLRTNRATGSGYWKATGKDREVCS 110
                      79*************************8873.499*************8888899**************************************9 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      + +g l+g+kktLvfykgrap+gekt+Wv+heyrle
  Spipo12G0038900 111 AsGGVLIGMKKTLVFYKGRAPRGEKTKWVLHEYRLE 146
                      977888****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-586150IPR003441NAC domain
PROSITE profilePS5100553.73318157IPR003441NAC domain
PfamPF023651.2E-2619145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MEEVLWEMMG EDTNERGLPP GFRFYPTDEE LVTFYLAGKV FNGGFVGVDM VEIDLNRCEP  60
WELPDVAKLG EREWYFYSLR DRKYPTGLRT NRATGSGYWK ATGKDREVCS ASGGVLIGMK  120
KTLVFYKGRA PRGEKTKWVL HEYRLEGDFS RRLACKY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-471414516145NAC domain-containing protein 19
3swm_B2e-471414516145NAC domain-containing protein 19
3swm_C2e-471414516145NAC domain-containing protein 19
3swm_D2e-471414516145NAC domain-containing protein 19
3swp_A2e-471414516145NAC domain-containing protein 19
3swp_B2e-471414516145NAC domain-containing protein 19
3swp_C2e-471414516145NAC domain-containing protein 19
3swp_D2e-471414516145NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020535450.16e-95protein CUP-SHAPED COTYLEDON 3 isoform X1
RefseqXP_020535451.16e-95protein CUP-SHAPED COTYLEDON 3 isoform X1
SwissprotQ9S8512e-87NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLW9QWF75e-97W9QWF7_9ROSA; Protein CUP-SHAPED COTYLEDON 3
STRINGXP_010094524.18e-98(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.17e-90NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]