PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo12G0003900

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

MYB

Protein Properties

Length: 267aa MW: 29126.1 Da PI: 9.4517

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo12G0003900	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	67	3.4e-21	26	71	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ l+++v+++G+++W++I+++++ gR++k+c++rw + Spipo12G0003900 26 KGPWSPEEDDALKKLVQKHGPRNWSLISKHVP-GRSGKSCRLRWCNQ 71 79****************************.*********985 PP
2	Myb_DNA-binding	56.7	5.4e-18	80	122	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde++ +a++++G++ W+tIar + gRt++ +k++w++ Spipo12G0003900 80 PFTQEEDEKIMRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 122 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	29.892	21	76	IPR017930	Myb domain
SuperFamily	SSF46689	3.18E-33	23	119	IPR009057	Homeodomain-like
SMART	SM00717	2.1E-19	25	74	IPR001005	SANT/Myb domain
Pfam	PF00249	7.8E-21	26	71	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.7E-28	27	79	IPR009057	Homeodomain-like
CDD	cd00167	1.77E-18	28	70	No hit	No description
SMART	SM00717	7.2E-15	77	125	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	21.849	78	127	IPR017930	Myb domain
CDD	cd00167	1.19E-12	80	123	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-24	80	126	IPR009057	Homeodomain-like
Pfam	PF00249	5.5E-15	80	122	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MQSVAGGAVN TGGATGAARR DADRIKGPWS PEEDDALKKL VQKHGPRNWS LISKHVPGRS 60 GKSCRLRWCN QLSPQVEHRP FTQEEDEKIM RAHAKFGNKW ATIARLLSGR TDNAIKNHWN 120 STLKRKYASC GLPSAGGISC CSASVKDDVI VADDAVGGVY CKGDLIDRQE DEYSDERPLK 180 RAGSGVPVPS GGLSQPGPGK KQQQFPFSAE FLAIMEDMIK KEVKSYMLGL EHSGVTFVLP 240 QPPQKHHPFD GLRSVDVNQI EVSKLK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-41	25	126	3	104	MYB PROTO-ONCOGENE PROTEIN
1mse_C	1e-41	25	126	3	104	C-Myb DNA-Binding Domain
1msf_C	1e-41	25	126	3	104	C-Myb DNA-Binding Domain
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00632	PBM	Transfer from PK28565.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001268121.1	6e-79	sucrose responsive element binding protein
TrEMBL	M0SQH8	3e-80	M0SQH8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P20150_001	5e-81	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP789	38	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	1e-65	myb domain protein 73

Link Out ? help Back to Top
Phytozome	Spipo12G0003900