PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo12G0002000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | ERF | ||||||||
Protein Properties | Length: 217aa MW: 22868.5 Da PI: 9.9351 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 8e-20 | 23 | 73 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +gr++AeIrdp++ ++r++lg+f++ae+Aa+a++ a+++l+g Spipo12G0002000 23 TRFRGVRRRP-WGRFAAEIRDPVK---KTRVWLGTFDSAEDAARAYDVAALALRG 73 589*******.**********654...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.02E-33 | 23 | 80 | No hit | No description |
Pfam | PF00847 | 2.0E-13 | 23 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 24 | 82 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.236 | 24 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-37 | 24 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-32 | 24 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MRKGRGAAAA PGTGAGGGSD EETRFRGVRR RPWGRFAAEI RDPVKKTRVW LGTFDSAEDA 60 ARAYDVAALA LRGPKARTNF PPAAAAGAAP PPLSVVGLSP HRRRHRQKHH HPGPLPQQRP 120 TSSCHSSTVE SFSGPKMSGT PVRQSDPPPR PPRALAGDED CHSDCGSSST VVDDDDGGGI 180 GAFSSLQRHL PPIHLPFDLN LPPADDEHQC AGGLRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-20 | 21 | 88 | 11 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00194 | DAP | Transfer from AT1G50640 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020694474.1 | 3e-54 | ethylene-responsive transcription factor 3 | ||||
Swissprot | O80339 | 3e-34 | ERF82_ARATH; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A2I0W524 | 7e-53 | A0A2I0W524_9ASPA; Ethylene-responsive transcription factor 3 | ||||
STRING | XP_008801873.1 | 1e-48 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5123 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 1e-09 | ethylene response factor 7 |
Link Out ? help Back to Top | |
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Phytozome | Spipo12G0002000 |
Publications ? help Back to Top | |||
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