PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0000800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 265aa    MW: 29107.5 Da    PI: 10.9408
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0000800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.3e-30198254358
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                      D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+H h
  Spipo12G0000800 198 DEYSWRKYGQKPIKGSPYPRGYYKCSSLrGCPARKHVERALDDPTMLIVTYEGDHLH 254
                      9*************************998**************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.4E-15160194IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.0E-32184255IPR003657WRKY domain
PROSITE profilePS5081129.149191257IPR003657WRKY domain
SuperFamilySSF1182905.36E-26194256IPR003657WRKY domain
SMARTSM007742.4E-36196256IPR003657WRKY domain
PfamPF031069.4E-26198254IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MTFMAGFRSM EKLLRLLSHQ SPEKRLEEQG PAVAVAAECR GAVAKFRKVI SLLDHARTGH  60
ARFRRAPALP HQMKRLAGEE AAPATAEAKK RKKEDEEGSL RRLPPLPHIH QNHHLLQRHR  120
FSTADPAAPL TTAPRAAAGQ PPGSSSFSLP LKRSFGTSSE GAAGPGKCHC PRKSRKLRLR  180
RTVRVPAISA KMADIPPDEY SWRKYGQKPI KGSPYPRGYY KCSSLRGCPA RKHVERALDD  240
PTMLIVTYEG DHLHGPSDPA APPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-191932541474Probable WRKY transcription factor 4
2lex_A1e-191932541474Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18892KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022868232.11e-73probable WRKY transcription factor 7
SwissprotO221764e-62WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A1S4CEW42e-70A0A1S4CEW4_TOBAC; probable WRKY transcription factor 7
STRINGXP_009604893.13e-71(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.18e-54WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]