PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo11G0051700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 339aa    MW: 36804.4 Da    PI: 6.4039
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo11G0051700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-18161211256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +grWvAeIr p++   r r +lg+f+tae+Aa a++  + kl+ge
  Spipo11G0051700 161 LYRGVRQRH-WGRWVAEIRLPRN---RSRLWLGTFDTAEDAAMAYDCEAFKLRGE 211
                      59******9.**********955...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.38E-31160220No hitNo description
PROSITE profilePS5103223.037161218IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23161219IPR016177DNA-binding domain
SMARTSM003801.0E-37161224IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-32161219IPR001471AP2/ERF domain
PRINTSPR003671.3E-10162173IPR001471AP2/ERF domain
PfamPF008473.7E-12162211IPR001471AP2/ERF domain
PRINTSPR003671.3E-10184200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEDRRRLTSG NKGMPILQLG KSEMQGDLQP PIFEEASPRP LKKLRSPERR RPPPFSCPAT  60
PTATGGRAAS SSRLLLPFSC ETPPQPISPL FHPQNRQQQM ITFSYGDQLD PIAAAAEALN  120
LSPRGHMITM NQSACHGGER SPCYSLFRPP FSSSAVSSGK LYRGVRQRHW GRWVAEIRLP  180
RNRSRLWLGT FDTAEDAAMA YDCEAFKLRG ENARLNFPDL FLGKKGGAAH GGAATTSASS  240
MPSSAAAPEA EEVAPQVHPP ATAEDGPLDW GGVMDDAAWV NEWGPGSSVW DDVEEAHRLL  300
LQSRPPPASP PSPEMEETAM PEAAAPASFF PMSMWGDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19157218163ATERF1
3gcc_A1e-19157218163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276746e-57KJ727674.1 Zea mays clone pUT5601 AP2-EREBP transcription factor (EREB76) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002517949.15e-62ethylene-responsive transcription factor ERF054
TrEMBLA0A1D1XSQ02e-81A0A1D1XSQ0_9ARAE; Ethylene-responsive transcription factor ERF053
STRINGXP_002517949.12e-61(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-40ERF family protein