PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo11G0016900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family M-type_MADS
Protein Properties Length: 194aa    MW: 21215.2 Da    PI: 8.2546
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo11G0016900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.84.5e-211763147
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                     krie    rqvtf+kRr+g++KKA EL+vLC+a++a ++fs+ g+ y
  Spipo11G0016900 17 KRIEGREARQVTFTKRRTGLFKKAAELCVLCGAQAAAVVFSPGGRPY 63
                     79****************************************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-30968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.287969IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-281094IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-191131IPR002100Transcription factor, MADS-box
PfamPF003192.5E-231865IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-193146IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-194667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEAGKRRGRG RRRIEIKRIE GREARQVTFT KRRTGLFKKA AELCVLCGAQ AAAVVFSPGG  60
RPYVFGDPAV EGIMDRFLGV QMPPASTSLP SAVGEEFHRD EAMSSGGGRH EQSAAAWEEQ  120
IERFGLEELA RLRDAISDAK RSVKLAREAE ITSPLVSSEM ESPLDSMLQQ MNHMEHASIG  180
TSAAINPFGF PWL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-23AGAMOUS-like 61