PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0187900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C2H2 | ||||||||
Protein Properties | Length: 186aa MW: 19684.2 Da PI: 9.1154 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.0003 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Spipo0G0187900 69 FSCNYCRRKFFSSQALGGHQNAH 91 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.47E-6 | 67 | 97 | No hit | No description |
PROSITE profile | PS50157 | 11.302 | 69 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MNRCNVEPSE ATSEVCSQVA SNRSNQEEAT ATSPGKLSLD LSLSSTGESF TGAPPRSGGA 60 PAAMAPRVFS CNYCRRKFFS SQALGGHQNA HKRERTMAKR GLQLSSFPSC PSLASLPLHG 120 SSQVMAMEIK AHALPHREGR RGRAPMLLEE KGDGFFFARS FPGAGIPPSS PAPAPAEELD 180 LTLRL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010936878.1 | 6e-38 | zinc finger protein 4 | ||||
Refseq | XP_010936879.1 | 6e-38 | zinc finger protein 4 | ||||
TrEMBL | A0A1D1XY43 | 3e-38 | A0A1D1XY43_9ARAE; Zinc finger protein 4 | ||||
STRING | XP_008776604.1 | 1e-33 | (Phoenix dactylifera) | ||||
STRING | XP_008798432.1 | 1e-33 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9847 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 8e-25 | zinc-finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0187900 |