PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G80730.1 | ||||||||
Common Name | ATZFP1, F23A5.8, ZFP1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 228aa MW: 25467.8 Da PI: 10.5605 | ||||||||
Description | zinc-finger protein 1 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 68 | 90 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H AT1G80730.1 68 FSCNYCQRKFYSSQALGGHQNAH 90 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.25E-6 | 65 | 95 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 68 | 95 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 70 | 90 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MEPSIKGDQE MLKIKKQGHQ DLELGLTLLS RGTATSSELN LIDSFKTSSS STSHHQHQQE 60 QLADPRVFSC NYCQRKFYSS QALGGHQNAH KRERTLAKRG QYYKMTLSSL PSSAFAFGHG 120 SVSRFASMAS LPLHGSVNNR STLGIQAHST IHKPSFLGRQ TTSLSHVFKQ SIHQKPTIGK 180 MLPEKFHLEV AGNNNSNMVA AKLERIGHFK SNQEDHNQFK KIDLTLKL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 790672 | 0.0 | ||||
Genevisible | 261910_at | 0.0 | ||||
Expression Atlas | AT1G80730 | - | ||||
AtGenExpress | AT1G80730 | - | ||||
ATTED-II | AT1G80730 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in the shoot apex, including the apical meristem, developing leaves and developing vascular system. {ECO:0000269|PubMed:10794528, ECO:0000305|PubMed:8980531}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a zinc finger protein and is expressed at high levels in the shoot apex, including the apical meristem, developing leaves and the developing vascular system. expression induced three days post germination. T-DNA insertion mutant has a dominant phenotype in leaf initiation. | |||||
UniProt | May play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:24808098, ECO:0000305|PubMed:8980531}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G80730.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269|PubMed:10794528}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G80730 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATHZFPA | 0.0 | L39644.1 Arabidopsis thaliana zinc finger protein 1 (ZFP1) mRNA, complete cds. | |||
GenBank | ATU53501 | 0.0 | U53501.1 Arabidopsis thaliana chromosome I cosmid g8261 DNA (cytosine-5-) methyltransferase, zinc finger protein 1, nucleoporin 98, poly A+ RNA export protein, plasma membrane ATPase 2, and serine/threonine protein kinase genes, complete cds. | |||
GenBank | BT026406 | 0.0 | BT026406.1 Arabidopsis thaliana At1g80730 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F23A5 | 0.0 | AC011713.2 Arabidopsis thaliana chromosome 1 BAC F23A5 sequence, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_178188.1 | 1e-168 | zinc-finger protein 1 | ||||
Swissprot | Q42485 | 1e-169 | ZFP1_ARATH; Zinc finger protein 1 | ||||
TrEMBL | A0A384KNY0 | 1e-167 | A0A384KNY0_ARATH; ZFP1 | ||||
TrEMBL | Q0V814 | 1e-167 | Q0V814_ARATH; At1g80730 | ||||
STRING | AT1G80730.1 | 1e-168 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11858 | 16 | 28 | Representative plant | OGRP82 | 15 | 137 |
Link Out ? help Back to Top | |
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Phytozome | AT1G80730.1 |
Entrez Gene | 844412 |
iHOP | AT1G80730 |
wikigenes | AT1G80730 |