PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0182400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WOX
Protein Properties Length: 159aa    MW: 17487.9 Da    PI: 9.7402
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0182400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.57.2e-212079357
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    +R+++tkeq+  Le l+++  r+p+ae+++++A kl    +++ ++V++WFqN++a++++
  Spipo0G0182400 20 SRWNPTKEQISLLEGLYKQgVRTPTAEQIQHIAGKLqeygRIEGKNVFYWFQNHKARQRQ 79
                    7*****************99**************************************97 PP
2Wus_type_Homeobox116.41.3e-371881265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       a++RW+Pt+eQi +Le lyk+G+rtP++e+iq+i+ +L+eyG+ie+kNVfyWFQN+kaR+rqkq
     Spipo0G0182400 18 ACSRWNPTKEQISLLEGLYKQGVRTPTAEQIQHIAGKLQEYGRIEGKNVFYWFQNHKARQRQKQ 81
                       689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.1E-51784IPR001356Homeobox domain
SuperFamilySSF466891.33E-131986IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-82079IPR009057Homeodomain-like
PfamPF000462.1E-182079IPR001356Homeobox domain
CDDcd000863.83E-62181No hitNo description
PROSITE profilePS5007110.5922580IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MGEGEEEEKG PSVAAPPACS RWNPTKEQIS LLEGLYKQGV RTPTAEQIQH IAGKLQEYGR  60
IEGKNVFYWF QNHKARQRQK QKQESFGHLS RLLRPRAGPP PLRPAPPHPT LHHPPPAGGT  120
LLRSTPLYVP PLAGVRCYHQ PLPAVVFAGA VAAEGAEET
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381843.13e-46PREDICTED: WUSCHEL-related homeobox 5
SwissprotQ6X7K13e-37WOX2_ARATH; WUSCHEL-related homeobox 2
TrEMBLM0RLN15e-43M0RLN1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P26570_0018e-44(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.12e-37WUSCHEL related homeobox 2
Publications ? help Back to Top
  1. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  2. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce.
    BMC Plant Biol., 2016. 16: p. 19
    [PMID:26786587]
  3. Zhang Z,Tucker E,Hermann M,Laux T
    A Molecular Framework for the Embryonic Initiation of Shoot Meristem Stem Cells.
    Dev. Cell, 2017. 40(3): p. 264-277.e4
    [PMID:28171749]