PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0177000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 221aa    MW: 23694.3 Da    PI: 7.5628
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0177000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.4e-11170217455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Spipo0G0177000 170 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 217
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.15E-9164221No hitNo description
SuperFamilySSF474591.83E-15164221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-15166221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-8170217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-7172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDPPSLVSKE SLSDLWALPQ RTADDGGGGV LWTRSAAAGG VPMGHNSLFA EVASRRAAAS  60
VEGSTVTEQS VRIRGGRKRR DSGPPLVAAS EDDSSKLISS CSGNELTESE AKRLKADGQR  120
EDGHGEEARA EAEVNSGACN KRGNQAAQTS VAPKQDYIHV RARRGQATDS HSLAERARRE  180
KISERMKILQ DLVPGCNKVI GKALVLDEII NYIQSLQHQV E
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020676695.15e-66transcription factor BHLH089 isoform X2
SwissprotQ84T088e-51BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A2I0X3J71e-64A0A2I0X3J7_9ASPA; Transcription factor BPE
STRINGXP_010255699.13e-64(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.16e-44BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]