PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0167600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 345aa    MW: 37224.5 Da    PI: 5.2019
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0167600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19121171155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+W+AeIrdp     r  r++lg+++taeeAak ++ a+ +l+g
  Spipo0G0167600 121 KKFRGVRRRP-WGKWAAEIRDPA----RrMRIWLGTYDTAEEAAKVYDSAAIQLRG 171
                     59********.**********82....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.11E-30121178No hitNo description
PfamPF008474.9E-13122171IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21122180IPR016177DNA-binding domain
PROSITE profilePS5103224.355122179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-29122179IPR001471AP2/ERF domain
SMARTSM003803.5E-35122185IPR001471AP2/ERF domain
PRINTSPR003672.9E-10123134IPR001471AP2/ERF domain
PRINTSPR003672.9E-10145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MFHGMMSEGG SGQALVKYSE HRRKVTKFYK AKSGARHLAG GDIPRLVRIS VTDPEATDSS  60
GDDDDEPGRR RRRRVKLYVD EISVEAPQCG RSHGGATGVE TELSWPCRKK AGSRSPAVGG  120
KKFRGVRRRP WGKWAAEIRD PARRMRIWLG TYDTAEEAAK VYDSAAIQLR GPDAMTNFSV  180
VYPPPVTASS GSGGYDSGEE SRNLSSPTSV LRYCCSKEAA PPPPEKSELR KETTEVEGGG  240
GNFNGGIFED LRLDLGELLP LEEATGSFFD DYLCFDSAAA GGFTEPRAGG EFLLEEFLSL  300
EAEMGGGVVF SGAGRAAPPP WHDSFFQDVG DVADLFSSDP LLVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18120191369ATERF1
3gcc_A1e-18120191369ATERF1
5wx9_A5e-181221821475Ethylene-responsive transcription factor ERF096
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16776GRRRRRRVKL
26873RRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1ZKV17e-74A0A1D1ZKV1_9ARAE; Ethylene-responsive transcription factor CRF4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-31cytokinin response factor 4