PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0162600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HD-ZIP
Protein Properties Length: 328aa    MW: 36401 Da    PI: 6.5216
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0162600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox308.9e-102263256
                    HHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox 32 eLAkklgLterqVkvWFqNrRakek 56
                    eL+k+l+L+ rq+k+WFqNrR+++k
  Spipo0G0162600  2 ELSKRLRLESRQIKFWFQNRRTQMK 26
                    8*********************998 PP
2START117.91.4e-371493281163
                     HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     ela +a++el+k+a+ eep+W  ++     +n+de+l++ ++  +     + +ea+r+++vv+ ++a lv +l+d + +W  +++    + +t++
  Spipo0G0162600 149 ELAVAAMDELMKMAQMEEPLWLMDAagkYVLNSDEYLRISSQCLGpkppgYVTEASRETAVVIINAAVLVDTLMDAN-RWPGMFPcmvaRTATTD 242
                     57899********************988889*********66544999*****************************.99999999999****** PP

                     EECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
           START  84 vissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                     v+  g       gal+lm +elq+lsplvp R++ f+R+++q+ +g w++vdvS++   ++p+s++  R  +lpSg+l+++++ng+sk
  Spipo0G0162600 243 VVAAGdgsggrsGALHLMRSELQVLSPLVPtREVSFLRFCKQHAEGLWAVVDVSLERAGDNPSSPPTCR--RLPSGCLLQDMPNGYSK 328
                     **************************************************************7666655..***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.872128IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-8135IPR009057Homeodomain-like
CDDcd000863.08E-6228No hitNo description
SuperFamilySSF466894.6E-7232IPR009057Homeodomain-like
PfamPF000464.0E-7226IPR001356Homeobox domain
PROSITE patternPS000270326IPR017970Homeobox, conserved site
PROSITE profilePS5084829.112140328IPR002913START domain
SuperFamilySSF559612.2E-21141328No hitNo description
CDDcd088751.20E-84146328No hitNo description
SMARTSM002340.0039149328IPR002913START domain
PfamPF018521.7E-30150328IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MELSKRLRLE SRQIKFWFQN RRTQMKAQLE RHQNALLKQE NDRLKMENMA IRESMRNPLC  60
PSCGGAAVLG EVSFEQQQLR LENARLRDEL DRVAAIAERF LGRPLGPPHS PLELAAAGNG  120
FSGLGEYFLP VVGMERPPPP PLERDMLQEL AVAAMDELMK MAQMEEPLWL MDAAGKYVLN  180
SDEYLRISSQ CLGPKPPGYV TEASRETAVV IINAAVLVDT LMDANRWPGM FPCMVARTAT  240
TDVVAAGDGS GGRSGALHLM RSELQVLSPL VPTREVSFLR FCKQHAEGLW AVVDVSLERA  300
GDNPSSPPTC RRLPSGCLLQ DMPNGYSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028069038.11e-144homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
SwissprotQ9M2E81e-125HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA0A1D1Y3Z51e-156A0A1D1Y3Z5_9ARAE; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 (Fragment)
TrEMBLA0A1D1ZLC71e-155A0A1D1ZLC7_9ARAE; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
STRINGAquca_013_00387.11e-143(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.21e-115HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]