PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G00730.2 | ||||||||
Common Name | AHDP, ANL2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 570aa MW: 62715.4 Da PI: 6.38 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.2 | 4.4e-21 | 135 | 190 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k AT4G00730.2 135 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 688999***********************************************999 PP | |||||||
2 | START | 217.7 | 4e-68 | 324 | 543 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 ela++a++elvk+a++eep+Wvks +++n+de++++f+++k +ea+r+sg+v+ ++ lve+l+d++ +W+e+++ +a+t++vis g AT4G00730.2 324 ELALTAMDELVKLAQSEEPLWVKSLdgerDELNQDEYMRTFSSTKPtgLATEASRTSGMVIINSLALVETLMDSN-RWTEMFPcnvaRATTTDVISGG 420 5899*************************************9999999***************************.********************** PP ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS START 89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179 galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d+ ++++ ++v+R +lpSg++++++sng+skvtwveh++++++++h+ AT4G00730.2 421 magtinGALQLMNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIDPVRENSGGAPVIR--RLPSGCVVQDVSNGYSKVTWVEHAEYDENQIHQ 516 ********************************************************9******..********************************* PP HHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 180 llrslvksglaegaktwvatlqrqcek 206 l+r+l++sgl +g ++w+atlqrqce+ AT4G00730.2 517 LYRPLLRSGLGFGSQRWLATLQRQCEC 543 *************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.07E-20 | 122 | 192 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-22 | 123 | 192 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.297 | 132 | 192 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.5E-18 | 133 | 196 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.3E-18 | 135 | 190 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.46E-18 | 135 | 192 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 167 | 190 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 42.687 | 315 | 546 | IPR002913 | START domain |
CDD | cd08875 | 2.67E-116 | 319 | 542 | No hit | No description |
SuperFamily | SSF55961 | 3.16E-30 | 319 | 543 | No hit | No description |
SMART | SM00234 | 5.2E-42 | 324 | 543 | IPR002913 | START domain |
Pfam | PF01852 | 8.3E-62 | 324 | 543 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009827 | Biological Process | plant-type cell wall modification | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0043481 | Biological Process | anthocyanin accumulation in tissues in response to UV light | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0006036 | anatomy | root epidermis | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020131 | anatomy | lateral root cap | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MNFGSLFDNT PGGGSTGARL LSGLSYGNHT AATNVLPGGA MAQAAAAASL FSPPLTKSVY 60 ASSGLSLALE QPERGTNRGE ASMRNNNNVG GGGDTFDGSV NRRSREEEHE SRSGSDNVEG 120 ISGEDQDAAD KPPRKKRYHR HTPQQIQELE SMFKECPHPD EKQRLELSKR LCLETRQVKF 180 WFQNRRTQMK TQLERHENAL LRQENDKLRA ENMSIREAMR NPICTNCGGP AMLGDVSLEE 240 HHLRIENARL KDELDRVCNL TGKFLGHHHN HHYNSSLELA VGTNNNGGHF AFPPDFGGGG 300 GCLPPQQQQS TVINGIDQKS VLLELALTAM DELVKLAQSE EPLWVKSLDG ERDELNQDEY 360 MRTFSSTKPT GLATEASRTS GMVIINSLAL VETLMDSNRW TEMFPCNVAR ATTTDVISGG 420 MAGTINGALQ LMNAELQVLS PLVPVRNVNF LRFCKQHAEG VWAVVDVSID PVRENSGGAP 480 VIRRLPSGCV VQDVSNGYSK VTWVEHAEYD ENQIHQLYRP LLRSGLGFGS QRWLATLQRQ 540 CECLAILISS SVTSHDNTCP FLTHLSLCLT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.24442 | 0.0 | flower| root| seed| vegetative tissue |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT4G00730 | |||||
AtGenExpress | AT4G00730 | |||||
ATTED-II | AT4G00730 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00421 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G00730.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G00730 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK226968 | 0.0 | AK226968.1 Arabidopsis thaliana mRNA for homeodomain protein AHDP, complete cds, clone: RAFL09-36-B10. | |||
GenBank | ATU85254 | 0.0 | U85254.1 Arabidopsis thaliana homeodomain protein AHDP mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001118907.1 | 0.0 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | B3H591 | 0.0 | B3H591_ARATH; Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | ||||
STRING | AT4G00730.1 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT4G00730.2 |
Entrez Gene | 828022 |
iHOP | AT4G00730 |
wikigenes | AT4G00730 |