PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0155800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | WRKY | ||||||||
Protein Properties | Length: 253aa MW: 27351.4 Da PI: 6.2854 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.8 | 7.3e-31 | 63 | 121 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY eHnh+ Spipo0G0155800 63 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPSMLVITYACEHNHP 121 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-31 | 60 | 123 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-26 | 61 | 123 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-36 | 62 | 122 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.973 | 63 | 123 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-26 | 64 | 121 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MDGSFSAKDD DSNSSKFEIP NGGSRPCSGR RSVQKRVVSI PITEAEGSRA KGGGSDGGGA 60 PPSDSWAWRK YGQKPIKGSP YPRGYYRCSS SKGCPARKQV ERSRADPSML VITYACEHNH 120 PWPLPKNQQQ QQQQQQKEGI HRRQPPPPPI FAADLSLTMM ADEFGWFSAV STSPPAGDAF 180 LGGPIGGDGA LMIPPASDQE ADDFTGSEGG APPEEEEALF AGLGELPECA VVFRRGFLDR 240 RIRMQIDGKD DRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-20 | 35 | 123 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 1e-20 | 35 | 123 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00167 | DAP | Transfer from AT1G29280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020098317.1 | 5e-68 | probable WRKY transcription factor 65 | ||||
Swissprot | Q9LP56 | 3e-59 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | A0A2I0AMQ9 | 2e-68 | A0A2I0AMQ9_9ASPA; Putative WRKY transcription factor 65 | ||||
STRING | Aquca_039_00057.1 | 4e-62 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7088 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 2e-40 | WRKY DNA-binding protein 65 |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0155800 |
Publications ? help Back to Top | |||
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