PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G29280.1 | ||||||||
Common Name | ATWRKY65, F28N24.4, WRKY65 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 259aa MW: 29054.4 Da PI: 5.4693 | ||||||||
Description | WRKY DNA-binding protein 65 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.9 | 1.5e-31 | 74 | 132 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp+++ itY++eHnh+ AT1G29280.1 74 SDSWAWRKYGQKPIKGSPYPRGYYRCSSTkGCPARKQVERSRDDPTMILITYTSEHNHP 132 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.0E-32 | 65 | 134 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.294 | 68 | 134 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-27 | 69 | 134 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.6E-38 | 73 | 133 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-26 | 75 | 132 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009047 | anatomy | stem | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MKRGLDMARS YNDHESSQET GPESPNSSTF NGMKALISSH SPKRSRRSVE KRVVNVPMKE 60 MEGSRHKGDT TPPSDSWAWR KYGQKPIKGS PYPRGYYRCS STKGCPARKQ VERSRDDPTM 120 ILITYTSEHN HPWPLTSSTR NGPKPKPEPK PEPEPEVEPE AEEEDNKFMV LGRGIETTPS 180 CVDEFAWFTE METTSSTILE SPIFSSEKKT AVSGADDVAV FFPMGEEDES LFADLGELPE 240 CSVVFRHRSS VVGSQVEIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-21 | 51 | 134 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 2e-21 | 51 | 134 | 6 | 79 | Disease resistance protein RRS1 |
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Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 260882_at | 0.0 | ||||
Expression Atlas | AT1G29280 | - | ||||
AtGenExpress | AT1G29280 | - | ||||
ATTED-II | AT1G29280 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | member of WRKY Transcription Factor; Group II-e | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00167 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G29280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G29280 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF452173 | 0.0 | AF452173.1 Arabidopsis thaliana WRKY transcription factor 65 (WRKY65) mRNA, complete cds. | |||
GenBank | BT026354 | 0.0 | BT026354.1 Arabidopsis thaliana At1g29280 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_174222.2 | 0.0 | WRKY DNA-binding protein 65 | ||||
Swissprot | Q9LP56 | 0.0 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | A0A384LK50 | 0.0 | A0A384LK50_ARATH; WRKY65 | ||||
TrEMBL | Q0V866 | 0.0 | Q0V866_ARATH; At1g29280 | ||||
STRING | AT1G29280.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5383 | 28 | 49 | Representative plant | OGRP14 | 17 | 875 |
Link Out ? help Back to Top | |
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Phytozome | AT1G29280.1 |
Entrez Gene | 839802 |
iHOP | AT1G29280 |
wikigenes | AT1G29280 |