PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0147900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 292aa    MW: 31277.9 Da    PI: 5.4815
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0147900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.91e-23159205247
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTE CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkv 47 
                     +D ++WrKYGqK++kgs+fpr+YY+C+s+ gC ++k+vers  dp +
  Spipo0G0147900 159 SDLWAWRKYGQKPIKGSPFPRGYYKCSSSkGCLARKQVERSPVDPAM 205
                     799************************998************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-22144205IPR003657WRKY domain
PROSITE profilePS5081125.029153219IPR003657WRKY domain
SuperFamilySSF1182909.15E-19156205IPR003657WRKY domain
SMARTSM007744.2E-24158209IPR003657WRKY domain
PfamPF031062.8E-18160203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGDDDGWDLQ AVVKGCCGSA AASAAPAAED PSSSFPPPLI ITEMGKEEDE DWSFSFPDLC  60
AAPADLHELE ELCKPFISKT PQQQRKQQQN QKQKQKQSLS SPKGSSSSSA SAFQLSGGRW  120
AAAKPSPPQR AFLRPPASKR RKNQQKKVVC QVPADRLSSD LWAWRKYGQK PIKGSPFPRG  180
YYKCSSSKGC LARKQVERSP VDPAMEVNAA AAPRQQASKA SSSGSPPIQK EEDEEEEALH  240
IGDVEMMSED EMLFLDTGDG GAAFSDVLSE HFGAFPTPWL TSSAAAVAGG S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0947109e-31FP094710.1 Phyllostachys edulis cDNA clone: bphyem120k20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792407.17e-59WRKY transcription factor 22-like isoform X2
TrEMBLA0A2H3Y2E32e-57A0A2H3Y2E3_PHODC; WRKY transcription factor 22-like isoform X2
STRINGXP_008792407.13e-58(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.14e-32WRKY DNA-binding protein 27