PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0125500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family Trihelix
Protein Properties Length: 443aa    MW: 49992.5 Da    PI: 6.4235
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0125500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.91.5e-24114215186
        trihelix   1 rWtkqevlaLiearremeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                     +Wt+ +v++Li+++++++e+  +++               +kk++W++vsk+m+ergf +sp+qC++k+++lnkryk+++++ +++ ++++++t 
  Spipo0G0125500 114 KWTDAMVRLLITIVSYIGEDAVSENnggcgggarrklsllQKKGKWKSVSKVMAERGFLVSPQQCEDKFNDLNKRYKRLTDILGRGtSCRVVETP 208
                     7**************99988776555778999999999*9**********************************************669999999 PP

        trihelix  80 pyfdqle 86 
                     +++d ++
  Spipo0G0125500 209 ALLDMMD 215
                     9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.4E-22112241No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MMPRAPYGVS DPRGSVQMHN QQFQIHPFQH LQYPREPQEL QQQAQHHDPA GLPHSSGQQL  60
HGPKQPQAPQ MVDYSRCDHG GNQGSDEEEP SEDHSNAHDN RSQGKASTAW HRMKWTDAMV  120
RLLITIVSYI GEDAVSENNG GCGGGARRKL SLLQKKGKWK SVSKVMAERG FLVSPQQCED  180
KFNDLNKRYK RLTDILGRGT SCRVVETPAL LDMMDHLSEK AKDDVRKILS SKHLFYEEMC  240
SYHNCNRLHL PADPSIQRSV QLALRSGDDH DPGRGSHDDD GEEDDRGMDT DGRDEEGENL  300
EAFHGELAMG GGGGGGGGGG FFFPKRVKLD VEAEETDYSS RPDSQAASFD PTQMFPEGSE  360
AARVQDQLMR SRALQLKEQQ LQIQAQMTEL ERQRARWRQL SKRKDRDIDR LRVENEKMRL  420
ENEQLALQLK YKELKNNNPL SS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241711.11e-146PREDICTED: uncharacterized protein LOC104586241
RefseqXP_019056198.11e-146PREDICTED: uncharacterized protein LOC104586241
RefseqXP_019056199.11e-146PREDICTED: uncharacterized protein LOC104586241
TrEMBLA0A1D1YT371e-149A0A1D1YT37_9ARAE; Uncharacterized protein
STRINGXP_010241711.11e-145(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.13e-99sequence-specific DNA binding transcription factors