PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G21200.1
Common NameF16F4.11
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 443aa    MW: 50933.3 Da    PI: 6.287
Description sequence-specific DNA binding transcription factors
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G21200.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.66e-27118212185
     trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                  +Wt+++v++Li+a+++++++++ ++         +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d++
  AT1G21200.1 118 KWTDKMVKLLITAVSYIGDDSSIDSssrrkfavlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDSI 212
                  7**************9999999765567788888**********************************************669999998888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-24116239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDGNFPQGGV VRSGASSYGG FDLQGSMRVH HQDSMNQQHR HNPNSRPLHE GLPFTMVTGQ  60
TCDHHQNQNM SMSEQQKAER EKNSVSDDDE PSFTEEGGDG VHNEANRSTK GSPWQRVKWT  120
DKMVKLLITA VSYIGDDSSI DSSSRRKFAV LQKKGKWKSV SKVMAERGYH VSPQQCEDKF  180
NDLNKRYKKL NDMLGRGTSC QVVENPALLD SIGYLNDKEK DDVRKIMSSK HLFYEEMCSY  240
HNGNRLHLPH DLALQRSLQL ALRSRDDHDN DDSRKHQMED LDDEDHDGDG DEHDEYEEQH  300
YAYGDCRVNH YGGGGGPLKK IRPSLSHEDG DHPSHVNSLE CNKVSLPQIP FSQADVNQGG  360
AESGRAGSVQ KQWMESRTLQ LEEQKLQIQV ELLELEKQRF RWQRFSKKRD QELERMRMEN  420
ERMKLENDRM GLELKQRELG VEL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.155430.0seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO150279860.0
Genevisible259562_at0.0
Expression AtlasAT1G21200-
AtGenExpressAT1G21200-
ATTED-IIAT1G21200-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G21200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G21200
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0458500.0AY045850.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankAY0913780.0AY091378.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF16F40.0AC036104.3 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001322826.10.0sequence-specific DNA binding transcription factor
RefseqNP_564136.10.0sequence-specific DNA binding transcription factor
TrEMBLA0A384L7800.0A0A384L780_ARATH; Uncharacterized protein
TrEMBLQ9LMN50.0Q9LMN5_ARATH; F16F4.11 protein
STRINGAT1G21200.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Representative plantOGRP27961329
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Sottosanto JB,Gelli A,Blumwald E
    DNA array analyses of Arabidopsis thaliana lacking a vacuolar Na+/H+ antiporter: impact of AtNHX1 on gene expression.
    Plant J., 2004. 40(5): p. 752-71
    [PMID:15546358]
  3. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]
  4. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]