PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0112300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 222aa    MW: 24879.3 Da    PI: 8.7493
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0112300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.12e-3791291128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevd.iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     lppGfrFhPtdeelv +yL++kv +++l++  vi+e++ + +++PwdLp +    eke yfF+   +k++  + ++ra +sgyWk tg+++e+++
  Spipo0G0112300   9 LPPGFRFHPTDEELVLQYLQRKVFSRPLPA-AVIPELElLSRYDPWDLPGC---PEKERYFFCIMPEKQR--RCPHRA-SSGYWKPTGRSREIIA 96 
                     79****************************.89****725678******54...6789******999875..466775.78************** PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++vg kk+Lvf   + ++g++tdW+mheyrl
  Spipo0G0112300  97 -CNQVVGAKKSLVFNLWKGSNGSRTDWFMHEYRL 129
                     .999***********99***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-446156IPR003441NAC domain
PROSITE profilePS5100544.3359156IPR003441NAC domain
PfamPF023651.2E-2210129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAREGAVRLP PGFRFHPTDE ELVLQYLQRK VFSRPLPAAV IPELELLSRY DPWDLPGCPE  60
KERYFFCIMP EKQRRCPHRA SSGYWKPTGR SREIIACNQV VGAKKSLVFN LWKGSNGSRT  120
DWFMHEYRLA GIFFQQKKLS LGPSAEEWVL CRIFRKRRAG KGGAAVEGGA ERCRLPNQIA  180
LGSLPSDSES SCVTEEASDD DGEDGSCRSS SSPSLSPRRD P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-33716115170NO APICAL MERISTEM PROTEIN
1ut4_B8e-33716115170NO APICAL MERISTEM PROTEIN
1ut7_A8e-33716115170NO APICAL MERISTEM PROTEIN
1ut7_B8e-33716115170NO APICAL MERISTEM PROTEIN
3swm_A1e-32716118173NAC domain-containing protein 19
3swm_B1e-32716118173NAC domain-containing protein 19
3swm_C1e-32716118173NAC domain-containing protein 19
3swm_D1e-32716118173NAC domain-containing protein 19
3swp_A1e-32716118173NAC domain-containing protein 19
3swp_B1e-32716118173NAC domain-containing protein 19
3swp_C1e-32716118173NAC domain-containing protein 19
3swp_D1e-32716118173NAC domain-containing protein 19
4dul_A8e-33716115170NAC domain-containing protein 19
4dul_B8e-33716115170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777977.11e-60NAC domain-containing protein 83-like
SwissprotQ9FY932e-52NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2H3X4022e-59A0A2H3X402_PHODC; NAC domain-containing protein 83-like
STRINGXP_008777977.14e-60(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-51NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]