PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0099200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 308aa    MW: 33278.4 Da    PI: 9.1341
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0099200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.37.3e-07139161123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ Cgk F+r  nL+ H+r H
  Spipo0G0099200 139 HHCHVCGKGFKRDANLRMHMRAH 161
                     68*******************99 PP
2zf-C2H211.20.0011254269621
                     TTEEESSHHHHHHHHH CS
         zf-C2H2   6 CgksFsrksnLkrHir 21 
                     Cg+sFsrk+ L+ H+ 
  Spipo0G0099200 254 CGTSFSRKDKLVGHLA 269
                     **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.43E-6137165No hitNo description
SMARTSM003550.0053139161IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.9E-7139187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.487139166IPR007087Zinc finger, C2H2
PROSITE patternPS000280141161IPR007087Zinc finger, C2H2
SMARTSM0035558184217IPR015880Zinc finger, C2H2-like
SMARTSM0035522222244IPR015880Zinc finger, C2H2-like
SMARTSM00355170250274IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MMDGVLSEPA ALCFLQNQQG LISPPALLHG EEEPCSTLLS SISMLRDKVD QLGSIAGMVV  60
SHRGVEQESA AAMAVGGAGA IVKEIILTAS TMMFALQRMA LGAGGDREKL FADEVDKPSP  120
AASEIVELEA ADLLAKYTHH CHVCGKGFKR DANLRMHMRA HGEEYKTRAA LASPAAGGGS  180
MRKYSCPQEG CRWNRKHPKF QPLKSMVCVK NHYRRSHCPK MYVCNRCNRK KFAVVSDLRT  240
HEKHCGRLRW RCSCGTSFSR KDKLVGHLAL FPSHAAAAGG GGGGGCPSDQ VSPQQIRVEV  300
TRSAHLN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015388772.11e-105protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like isoform X2
RefseqXP_017423706.11e-104PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ0WT245e-88STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A022R7A21e-101A0A022R7A2_ERYGU; Uncharacterized protein
TrEMBLA0A426ZWG51e-102A0A426ZWG5_ENSVE; Uncharacterized protein
STRINGMigut.N02542.1.p1e-101(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.12e-78C2H2 family protein