PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0088700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 319aa    MW: 36049.5 Da    PI: 4.5215
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0088700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.41e-4761331129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtd elv++yLk+k+ gk+l++ e+i+e+++yk+ Pw+L+ k ++++++ ewyfF+  +kky++g rknr+t+ gyWk+tgkdk++ 
  Spipo0G0088700   6 LPPGFRFHPTDVELVCYYLKRKIMGKPLQF-EAISEIELYKFAPWELRdKsCLRGRDLEWYFFCVGEKKYSNGLRKNRTTEFGYWKTTGKDKPIS 99 
                     79***************************9.89**************85347777888************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +++++ +kktLvf+ g+  +g +tdWvmheyrle
  Spipo0G0088700 100 Y-NSRTIAMKKTLVFHMGK-VQGARTDWVMHEYRLE 133
                     9.999***********765.5779**********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-562155IPR003441NAC domain
PROSITE profilePS5100552.7076155IPR003441NAC domain
PfamPF023659.9E-277132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MPMTTLPPGF RFHPTDVELV CYYLKRKIMG KPLQFEAISE IELYKFAPWE LRDKSCLRGR  60
DLEWYFFCVG EKKYSNGLRK NRTTEFGYWK TTGKDKPISY NSRTIAMKKT LVFHMGKVQG  120
ARTDWVMHEY RLEDADLADA GLLQDAYVLC KIFKKSGRGP KIGEQYGAPF DETEWDDAQA  180
DDYAVDSSPF SSTIVNEVSA VENAQVVNPQ TAPGSLPDVA AAHEEPPSQL QLHPVQEHVS  240
LGFSDCIYDG PYTTMHSALE TENRWSSEWE CDDFLEIVDF DPQKLSQLLE VDPAGLVPSL  300
MEDPTGRAAE WGSQGFND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-43515614169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382937.13e-93PREDICTED: NAC domain-containing protein 82-like isoform X1
RefseqXP_009382938.13e-93PREDICTED: NAC domain-containing protein 82-like isoform X1
RefseqXP_009382939.13e-93PREDICTED: NAC domain-containing protein 82-like isoform X2
SwissprotQ84K002e-75NAC78_ARATH; NAC domain-containing protein 78
TrEMBLA0A1D1YHW81e-101A0A1D1YHW8_9ARAE; NAC domain-containing protein 78
STRINGGSMUA_Achr11P09000_0011e-92(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47313664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.14e-70NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  6. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]