PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0078600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 429aa    MW: 45398.8 Da    PI: 6.7807
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0078600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_160.33.9e-19243305163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e e kr++rkq+NRe+ArrsR+R+++e+e L++ v+eL + N +L++e+++l  e+++  +e+
  Spipo0G0078600 243 EHEEKRQKRKQSNRESARRSRERRQKECEVLARQVAELNTHNADLRSEIDQLHAECKRIGTEN 305
                     5688****************************************************9988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.0E-1017100IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1704.7E-17239300No hitNo description
SMARTSM003381.6E-17243307IPR004827Basic-leucine zipper domain
PfamPF001703.9E-17244301IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.082245308IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-9247300No hitNo description
PROSITE patternPS000360250265IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MEPGGDGGVA TKPPAPANPT QRTPADSQSA SPTYPDWASA MQVFYAGGPA APGTTPPVFY  60
PSPPSLPAFV WGTQPLTFGT PVPHGSMFPH GGLGAHPAAP TGETVANGEK EVKLSQGIDS  120
GLTKPSDRGL DNCGVVAGNS GDGEKGTSGS DTCNESGGEE SSKTSREDDL SASGKGGYDQ  180
ILPVSLASSF PAASSHDGAH QWSSFCAGIG NMEKQGVLLT PPATAMNGQG KPVPEEFKGM  240
QDEHEEKRQK RKQSNRESAR RSRERRQKEC EVLARQVAEL NTHNADLRSE IDQLHAECKR  300
IGTENASITV GLSLTLRRKK ISWLVPSFLF DFVMPFALKL SDVDLPLMGE CFTLAGRTEG  360
VIWAHCVGCL GRLDSSASHL LVPNANGQKK HDPSASWSKI KGNLEPSCGI FLPQSCGKHR  420
NSIGWLFQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.25e-20G-box binding factor 1