PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0047400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | NF-YC | ||||||||
Protein Properties | Length: 199aa MW: 21220.5 Da PI: 4.2688 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 29.2 | 2e-09 | 77 | 155 | 19 | 96 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdi.aaavtrtdifdflvdiv 96 ++P r+k+i+k d +++++ +ea l+s + +lf+ l+ ++ a +k+++++ + +aa ++ dfl+d + Spipo0G0047400 77 PSFPPGRVKRIMKLDREINKVNSEAVFLISLSTDLFLALLAEKAGEAALAKKKKSVRMDHLlSAARSHPPCRDFLLDSI 155 57999***************************************************9988625666778899***9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.5E-17 | 77 | 140 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-13 | 78 | 140 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.29E-15 | 78 | 174 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MEAEEEQRAQ GEGDEEAEAE REAREEEQGE GEGQAGAGSV AEGEEEEDEG DQGAEEGGTV 60 GVEEEGEEAG EGGALQPSFP PGRVKRIMKL DREINKVNSE AVFLISLSTD LFLALLAEKA 120 GEAALAKKKK SVRMDHLLSA ARSHPPCRDF LLDSISLPTK PLPPPEAKQA PPKIAKPLPP 180 GARRIDQFFR KPSSVAPE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010925346.1 | 6e-41 | chromatin accessibility complex protein 1 | ||||
Refseq | XP_010925347.1 | 6e-41 | chromatin accessibility complex protein 1 | ||||
Refseq | XP_021644338.1 | 6e-41 | nuclear transcription factor Y subunit gamma-like | ||||
TrEMBL | A0A1D1Y4S8 | 7e-46 | A0A1D1Y4S8_9ARAE; Putative transcription factor C16C4.22 (Fragment) | ||||
STRING | VIT_01s0010g03550.t01 | 4e-39 | (Vitis vinifera) | ||||
STRING | XP_008786575.1 | 5e-39 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13342 | 26 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 5e-19 | nuclear factor Y, subunit C13 |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0047400 |