PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G43250.1 | ||||||||
Common Name | NF-YC13 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NF-YC | ||||||||
Protein Properties | Length: 130aa MW: 14672 Da PI: 10.3349 | ||||||||
Description | nuclear factor Y, subunit C13 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 50.7 | 4e-16 | 9 | 89 | 18 | 97 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 + e+P+ r+kki+k d+d+++i +ea +++ + elf+ l+ +s + + e+kr+t++ + av+r + + dfl+d p AT5G43250.1 9 RPEFPIGRVKKIMKLDKDINKINSEALHVITYSTELFLHFLAEKSAVVTAEKKRKTVNLDHLRIAVKRHQpTSDFLLDSLP 89 668***************************************************************9976489*****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 4.1E-21 | 11 | 74 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 3.52E-18 | 11 | 104 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.3E-20 | 12 | 89 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MEEEEGSIRP EFPIGRVKKI MKLDKDINKI NSEALHVITY STELFLHFLA EKSAVVTAEK 60 KRKTVNLDHL RIAVKRHQPT SDFLLDSLPL PAQPVKHTKS VSDKKIPAPP IGTRRIDDFF 120 SKGKAKTDSA |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT5G43250 | |||||
AtGenExpress | AT5G43250 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G43250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G43250 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB017070 | 0.0 | AB017070.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNL12. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_199139.1 | 8e-90 | nuclear factor Y, subunit C13 | ||||
TrEMBL | Q9FHS0 | 2e-88 | Q9FHS0_ARATH; Nuclear factor Y, subunit C13 | ||||
STRING | AT5G43250.1 | 3e-89 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12860 | 25 | 30 | Representative plant | OGRP9472 | 12 | 13 |
Link Out ? help Back to Top | |
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Phytozome | AT5G43250.1 |
Entrez Gene | 834343 |
iHOP | AT5G43250 |
wikigenes | AT5G43250 |
Publications ? help Back to Top | |||
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