PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0024600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 561aa    MW: 61328 Da    PI: 5.1735
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0024600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.22.2e-14457503346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                      rW++eE+  l +avk++G g+Wk I ++ +   + Rt+ ++k++w++
   Spipo0G0024600 457 RWSPEEENVLREAVKKYGAGRWKFILQCYPevfEDRTEVDLKDKWRN 503
                      9*********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.936450509IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-13452506IPR009057Homeodomain-like
SuperFamilySSF466891.51E-15452506IPR009057Homeodomain-like
SMARTSM007172.0E-11454507IPR001005SANT/Myb domain
CDDcd116601.41E-18456506No hitNo description
PfamPF002496.0E-12457503IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MDEDKASWIL EFVLRQPLED WLVKEILFRL PTTSFRDPHL KKALFLRRLS SDLSAGRFSE  60
DTLQSLELLE ELDRSLGATA AYEALKGAYC AVAAELTASP LRAGALAEAG FMEVVERLWN  120
WRVADLERSE AGGLVGEELR EWKKLAEEAV ADGVSRRRIL QRDTSRQAAE ALGEYLSVAF  180
KGMGPPVLEL TASALAGESN AGGGQAADEN ARANAVQGPP GAPAERVKAG EAAGRALPQE  240
ADEPAERSAP TKDDAEPAFP ASATDAEAIP QAQREEKSKA SAMPRRSDAS DDGRTSGLQL  300
LAAIEVDTVK EALKSSCAEL QMVVRDPLCE ALLRAVEIHT QMAETSANPN DSGRDYPADS  360
NAPGPSIGGD ARATAANGIT DRSQREGEKA KVPRPSLMER NPTARTFEWD EDSAESLSEK  420
SAYSPKRLRL PSPRIHRVSP LKVQKDTKFL RRRKIKRWSP EEENVLREAV KKYGAGRWKF  480
ILQCYPEVFE DRTEVDLKDK WRNINRDKNG ISLELDAEKA CRGTWRLHAA ASLQKWDLGG  540
CIFRVPVGLI VYEGGAASAS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1447453KFLRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1YNQ31e-124A0A1D1YNQ3_9ARAE; Telomeric repeat-binding factor 1 (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1605037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.28e-15MYB_related family protein