PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G58340.2
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 448aa    MW: 50424.4 Da    PI: 4.8441
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G58340.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.9e-10398445247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      + W +eE e l ++vk++G+  Wk I +  +     Rt+ ++k++w+++
      AT5G58340.2 398 KFWKPEEVEALREGVKEYGKS-WKDIKNGNPtvfAERTEVDLKDKWRNL 445
                      67*****************88.************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.902392448IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-11394445IPR009057Homeodomain-like
SuperFamilySSF466897.26E-12394445IPR009057Homeodomain-like
SMARTSM007177.4E-7396448IPR001005SANT/Myb domain
CDDcd116601.27E-14398446No hitNo description
PfamPF002491.6E-7400445IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEVIDQWVAE FFLLRQHNPR ASPINLISAL KLGDSSDCIK LKISSVLRDI SNSLIRGTID  60
EGMLDLLEIL EKLLLQQHSL LMDSHKSAYC WTATECTLRF MWPMFASDGL FTDALERIWT  120
KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA  180
LLGSSSLESV AQRRFLKRKA VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE  240
DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE  300
YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS  360
QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW KPEEVEALRE GVKEYGKSWK  420
DIKNGNPTVF AERTEVDLKD KWRNLVGG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192198RRFLKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.511010.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible247803_at0.0
Expression AtlasAT5G58340-
AtGenExpressAT5G58340-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G58340.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G58340
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7357390.0AY735739.1 Arabidopsis thaliana hypothetical protein AT5G58340 mRNA, complete cds.
GenBankAY9248700.0AY924870.1 Arabidopsis thaliana hypothetical protein (At5g58340) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001190566.10.0myb-like HTH transcriptional regulator family protein
RefseqNP_200642.20.0myb-like HTH transcriptional regulator family protein
TrEMBLQ5XUY30.0Q5XUY3_ARATH; Myb-like HTH transcriptional regulator family protein
STRINGAT5G58340.20.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Zhang Y,Wu Y,Liu Y,Han B
    Computational identification of 69 retroposons in Arabidopsis.
    Plant Physiol., 2005. 138(2): p. 935-48
    [PMID:15923328]