PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0020800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | B3 | ||||||||
Protein Properties | Length: 186aa MW: 20377.3 Da PI: 9.6007 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.3 | 4.3e-16 | 68 | 155 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp+ f+ eh kk ++ +tl de+g++ + +k++ l++GW++F+ +++L +gD v+F+l++r++f + Spipo0G0020800 68 FVKLMLQSHVTGGFWLGLPRAFCLEHLPKK--DTPMTLIDERGEESPTLYLAEKNG----LSAGWRGFAIDHELVDGDAVIFELVSRTTF--KAY 154 89************************6454..4459999****9999999556665....9***********************998888..555 PP E CS B3 96 v 96 + Spipo0G0020800 155 I 155 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-18 | 60 | 159 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-22 | 63 | 158 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.57E-24 | 66 | 157 | No hit | No description |
SMART | SM01019 | 2.1E-19 | 68 | 159 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.519 | 68 | 159 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.1E-14 | 68 | 157 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MAMIRRGLLL PGFLSEGSSS DAAMLSTIAR AGRRDLSDRV YASDAARAYA EETAKALQSQ 60 LASGFPSFVK LMLQSHVTGG FWLGLPRAFC LEHLPKKDTP MTLIDERGEE SPTLYLAEKN 120 GLSAGWRGFA IDHELVDGDA VIFELVSRTT FKAYIIRQRG YYEAGTRGPE GRAKKKRRYP 180 VSAPC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 177 | KKKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010922411.1 | 2e-61 | B3 domain-containing protein Os06g0194400 isoform X1 | ||||
Refseq | XP_010922412.1 | 2e-61 | B3 domain-containing protein Os06g0194400 isoform X1 | ||||
Refseq | XP_010922413.1 | 2e-61 | B3 domain-containing protein Os06g0194400 isoform X2 | ||||
Swissprot | Q1G3M3 | 1e-56 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | A0A1D1Y4V5 | 2e-73 | A0A1D1Y4V5_9ARAE; B3 domain-containing protein Os06g0194400 | ||||
STRING | EMT13106 | 3e-60 | (Aegilops tauschii) | ||||
STRING | Traes_7DS_A234A13E1.2 | 3e-60 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 4e-50 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0020800 |
Publications ? help Back to Top | |||
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