PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G19184.1
Common NameMVI11
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 277aa    MW: 31647.2 Da    PI: 9.2323
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G19184.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.4e-17130219198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f k +++s+v+   +l lp +f+++h+   ++++ +tl de+ ++ + k+  +k++    l++GW++F+ +++L +gD vvF+l+ r++f  +v ++r
  AT3G19184.1 130 FTKPMLQSHVTGGFWLGLPLPFCKAHMP--KRDVIMTLVDEEEEESQAKYLAQKNG----LSGGWRGFAIDHQLVDGDAVVFHLIARTTF--KVYIIR 219
                  899***********************84..4899****************555555....9************************98888..888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-19121220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-23123221IPR015300DNA-binding pseudobarrel domain
CDDcd100179.70E-25129219No hitNo description
PfamPF023623.0E-15130219IPR003340B3 DNA binding domain
SMARTSM010194.9E-23130221IPR003340B3 DNA binding domain
PROSITE profilePS5086310.475130221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009046anatomyflower
PO:0020100anatomyhypocotyl
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007611developmental stagepetal differentiation and expansion stage
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MVESELSYEQ IRLNRVEENK KRMGELNLNK LAQSLRVSSS SSSSSKPSPA KPRTMRIPVD  60
FSEVRRSSRA KGPPPSYKEF GLEPLERRPR RSSRRRDLLN RVYASDDARM YAFDRAEKLQ  120
SSLDSEYASF TKPMLQSHVT GGFWLGLPLP FCKAHMPKRD VIMTLVDEEE EESQAKYLAQ  180
KNGLSGGWRG FAIDHQLVDG DAVVFHLIAR TTFKVYIIRV NDDANNDSDG NEVNDDDSDG  240
NEEDRDNDNE SNEKQKETVS EGRQLRSSGK RKRRGRK
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible257034_at0.0
Expression AtlasAT3G19184-
AtGenExpressAT3G19184-
ATTED-IIAT3G19184-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G19184.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G19184
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4875610.0DQ487561.1 Arabidopsis thaliana clone 0000004119_0000003454 unknown protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001030726.20.0AP2/B3-like transcriptional factor family protein
SwissprotQ1G3M30.0Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A178VHQ00.0A0A178VHQ0_ARATH; Uncharacterized protein
STRINGAT3G19184.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Representative plantOGRP9951658
Publications ? help Back to Top
  1. Underwood BA,Vanderhaeghen R,Whitford R,Town CD,Hilson P
    Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations.
    Plant Biotechnol. J., 2006. 4(3): p. 317-24
    [PMID:17147637]
  2. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  3. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]