PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim06g009710.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 298aa MW: 34449.2 Da PI: 4.6746 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT eEde+l ++++ G g+W++ ++ g+ R++k+c++rw +yl Sopim06g009710.0.1 14 RGRWTSEEDEILTNYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.6 | 1.9e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T +E+ +++++ + lG++ W++Ia++++ gRt++++k++w+++l Sopim06g009710.0.1 67 RGNITSDEEAIIIKLRATLGNR-WSLIAEHLP-GRTDNEIKNYWNSHL 112 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.099 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.71E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.13E-7 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.06 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.17E-9 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0051555 | Biological Process | flavonol biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 298 aa Download sequence Send to blast |
MGRTPCCEKV GLKRGRWTSE EDEILTNYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LKSDLKRGNI TSDEEAIIIK LRATLGNRWS LIAEHLPGRT DNEIKNYWNS HLRRKVDSFR 120 IPGDEKLPQA VVELAKKGTQ VKHITKRGRS RRKIITRVSN STNENIEFDH IDDQMLWHDD 180 IVPMDDNYEV LDQDFITNCL WDDQGENLEI TDDNDNNNNN NEILSEDNYG KWDWEYLSEI 240 LNNEICGNST KETEQNNNNN NMSLCDINDN VQNCMNKEAT QENIDPMQSD LVAWLLS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00627 | PBM | Transfer from PK06182.1 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004240653.1 | 0.0 | transcription factor MYB111-like | ||||
TrEMBL | M1AB81 | 1e-169 | M1AB81_SOLTU; Uncharacterized protein | ||||
STRING | Solyc06g009710.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G49330.1 | 2e-71 | myb domain protein 111 |