PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g092930.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 362aa    MW: 40041.9 Da    PI: 7.9344
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g092930.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.61.9e-20550147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W++eEdell ++v+++G+++W++I++ ++ gR++k+c++rw + 
  Sopim02g092930.0.1  5 KGPWSPEEDELLQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 50
                        79******************************.***********985 PP
2Myb_DNA-binding574.4e-1859101347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  Sopim02g092930.0.1  59 AFTPEEDETIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 101
                         79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.601155IPR017930Myb domain
SuperFamilySSF466891.22E-32298IPR009057Homeodomain-like
SMARTSM007175.7E-18453IPR001005SANT/Myb domain
PfamPF002493.5E-20550IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-27658IPR009057Homeodomain-like
CDDcd001673.36E-17749No hitNo description
SMARTSM007173.8E-1556104IPR001005SANT/Myb domain
PROSITE profilePS5129421.46757106IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2359105IPR009057Homeodomain-like
CDDcd001672.44E-1259102No hitNo description
PfamPF002491.4E-1559101IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDRVKGPWSP EEDELLQQLV QKHGPRNWSL ISKSIPGRSG KSCRLRWCNQ LSPQVEHRAF  60
TPEEDETIIR AHARFGNKWA TIARLLNGRT DNAIKNHWNS TLKRKCSSLS ADEGNELADQ  120
LFENQQPPLK RSVSAGSAMP VTGFHFSPGS PSGSDSDSSL HVTSSSQSQV FKPVARTGGV  180
FPPSIDISSP PVDPPTSLSL SLPGVDLAES SNRSADSTQS KNPFQWLLPP MQIPPPPPPP  240
PPPLATTVPF ERVSAIQQSL QNPDFGQNSG GEQPDKVFVP FSQELLGVMQ EMIKTEVRNY  300
MMGVEQKQQY QRQHYQQQQP QQFQQQNHQL PSGLGLGLCM QQASDCFRDR AANRMGLSKF  360
D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-4041053104C-Myb DNA-Binding Domain
1msf_C2e-4041053104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010315996.10.0transcription factor MYB44
SwissprotO231605e-91MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A3Q7FBD70.0A0A3Q7FBD7_SOLLC; Uncharacterized protein
STRINGSolyc02g092930.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.16e-80myb domain protein r1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]