PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g031400.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 360aa    MW: 40556.7 Da    PI: 4.5948
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g031400.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rgrWT+eEd++l +++   G g+W++ ++  g+ R++k+c++rw +yl
  Sopen01g031400.1 14 RGRWTAEEDQILTNYIISNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                      8*******************************99************97 PP
2Myb_DNA-binding48.91.6e-1567112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ T +E+++++++++ lG++ W++Ia ++  gRt++++k++w+++l
  Sopen01g031400.1  67 RGNITSQEEDIIIKLHATLGNR-WSLIAGHLS-GRTDNEIKNYWNSHL 112
                       7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-20564IPR009057Homeodomain-like
PROSITE profilePS5129415.387961IPR017930Myb domain
SuperFamilySSF466891.13E-2611108IPR009057Homeodomain-like
SMARTSM007173.9E-111363IPR001005SANT/Myb domain
PfamPF002492.9E-131461IPR001005SANT/Myb domain
CDDcd001678.65E-81661No hitNo description
PROSITE profilePS5129423.75362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2465116IPR009057Homeodomain-like
SMARTSM007171.5E-1466114IPR001005SANT/Myb domain
PfamPF002492.3E-1367112IPR001005SANT/Myb domain
CDDcd001676.32E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGRTPCCEKV GIKRGRWTAE EDQILTNYII SNGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDLKRGNI TSQEEDIIIK LHATLGNRWS LIAGHLSGRT DNEIKNYWNS HLSRKVDSLR  120
IPSDEKLPKA VVDLAKKGTL KPIKKSSISR SKNKKSNLLE AKENNTSGAL IGIVPMPSTP  180
NIEKEALCCT NMPACDSAME LMQEDLAKIE VPNSWAGPIE AKGSLSSDSG MEWPRLEEIM  240
PDVVIDDEDM NTNFILNCLE EEVTSNTAGN SYSCIEEGDK KISSDDEKIK LLMDWQDDDE  300
LVWPTLPWEL ETDIIPSWPQ WDDTDTNLLQ NCTNNNNYEE ATTMEINNQN HSAIVSWLLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-22141187110B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135144KKGTLKPIKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5551270.0FN555127.1 Solanum chmielewskii mRNA for Myb 12 transcription factor (myb12 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015070907.10.0myb-related protein 308
TrEMBLD2EBC30.0D2EBC3_9SOLN; Myb 12 transcription factor
STRINGPGSC0003DMT4000233220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-72myb domain protein 12