PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_118540_mafx.t1 | ||||||||
Common Name | SOVF_118540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | ERF | ||||||||
Protein Properties | Length: 203aa MW: 22377.8 Da PI: 7.1432 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 8.2e-19 | 22 | 71 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp gk++r++lg+f+ta eAa+a++ a+++++g Sp_118540_mafx.t1 22 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAVEAAQAYDTAARQFRG 71 59*******.**********8...557***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.1E-36 | 22 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 22 | 80 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.327 | 22 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-31 | 22 | 79 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-12 | 22 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.04E-31 | 22 | 79 | No hit | No description |
PRINTS | PR00367 | 1.5E-10 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016604 | Cellular Component | nuclear body | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MVIKENPNSN SNENNNSNLE IRYRGVRKRP WGRYAAEIRD PGKKTRVWLG TFDTAVEAAQ 60 AYDTAARQFR GSKAKTNFPF TITPTAKSNS SSNGSDSATN TTSTIESLSH APSVHLNTTR 120 HHVTIDCGFG VYPFFVQQPQ VVGFVPHAFP VFYQHDLSMM QGAFEYSVAG GAQSDSDSSS 180 VVEDCQPRTE LKLDLNLAPP MEL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-22 | 23 | 82 | 3 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00623 | PBM | Transfer from PK19363.1 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021842477.1 | 1e-153 | ethylene-responsive transcription factor 4-like | ||||
Swissprot | Q9LW49 | 1e-44 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A0K9R148 | 1e-151 | A0A0K9R148_SPIOL; Uncharacterized protein | ||||
STRING | XP_010666079.1 | 3e-79 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 7e-35 | ethylene responsive element binding factor 4 |