PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK19363.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 225aa    MW: 24325.2 Da    PI: 9.7874
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK19363.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-202676256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               +y+GVr ++ +gr++AeIrdp++   + r++lg+f+taeeAaka++ a+++++g+
  PK19363.1 26 HYRGVRKRP-WGRYAAEIRDPTK---KSRVWLGTFDTAEEAAKAYDSAAREFRGA 76
               69*******.**********864...6*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.3E-142675IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-322683IPR001471AP2/ERF domain
CDDcd000187.61E-312684No hitNo description
SuperFamilySSF541712.16E-222684IPR016177DNA-binding domain
PROSITE profilePS5103224.0392683IPR001471AP2/ERF domain
SMARTSM003808.9E-402689IPR001471AP2/ERF domain
PRINTSPR003672.3E-112738IPR001471AP2/ERF domain
PRINTSPR003672.3E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MALKERVGVK KANNNKSIVD AGKEMHYRGV RKRPWGRYAA EIRDPTKKSR VWLGTFDTAE  60
EAAKAYDSAA REFRGAKAKT NFPIPSSPSA DRSPSQSSTV ESSGNDFADR DSTRRLSGGA  120
VFPFLQQEQV VAPTAPPPHH VVAAYRGVPS VGFVPTRPVL FFDALSRGEF VTPVYPVRFD  180
PGTVEFGSGG GAQVQSESDS SSVVEGQPRK VLDLDLNLAP PGEAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-222384264ATERF1
3gcc_A3e-222384264ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBM25215497Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010091472.25e-82ethylene-responsive transcription factor 4
TrEMBLA0A2P5DNH54e-94A0A2P5DNH5_TREOI; AP2/ERF transcription factor
STRINGXP_010091472.12e-81(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-30erf domain protein 9