PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 441321
Common NameSELMODRAFT_441321
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family TCP
Protein Properties Length: 693aa    MW: 71088.3 Da    PI: 10.1569
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
441321genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.76e-402724082123
     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...........kaak 92 
             + k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a ++  ++s +ss+s  s++           ++++
  441321 272 PSKRASTKDRHTKVEGRGRRIRMPAVCAARIFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPAIAAtLQGSLRSSGSGRSASlhtsiglaalgQQQR 374
             67999****************************************************************7777889999999977777654444555552222 PP

     TCP  93 saakskksqksaasalnlakesr............akararar 123
             +aa+   +  +         ++r            a ara a 
  441321 375 EAAELAAAAGH---------QHRleqlrqqsaaaaAAARAAAA 408
             22222222222.........22244444433333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.4E-36277418IPR005333Transcription factor, TCP
PROSITE profilePS5136928.341278332IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MRRGGGERRR GCAGGAALLQ PGGSVKAARE RRNWRGNARG FALCWHLLRR GERAGRGRGG  60
AANSRGGGGT VEDLLRFVPG CLSVTIVIVS VVHAVQSWIA FVVVEKEDEQ EEEEQEESGG  120
GGGRASRKNL GAPRQRMDPA SHGKSDSQSS ESGLSSQQQQ QQQQQQQQQQ QQFYQQQQHQ  180
QQRYRLQAQA AAAAAAAAAA QGGAIAQAMA AMGGSQHESP MGPSAEQPGG GGGAGAAASA  240
IAVGKAAGGG GGGGEAQEQA AAPPAAPPKK PPSKRASTKD RHTKVEGRGR RIRMPAVCAA  300
RIFQLTRELG HKSDGETIEW LLQQAEPAII AATGTGTIPA IAATLQGSLR SSGSGRSASL  360
HTSIGLAALG QQQREAAELA AAAGHQHRLE QLRQQSAAAA AAARAAAAQG WATESSEETR  420
LRSGLLGQPG EELVVGFQHE GLLGSAGDVD EGGSGGGGGG DGGGGSGSPE SSGHYRKRPR  480
GLLSSLRDPP DPQGITLGRS PSAAARSTQQ HQHQTMQQGL MVPSAFWMLP TGGGGGGGGV  540
AEQAIWTFNT AGGGAGGGGA SQLYRTAQQV TQGSPMMPLT GSVLPGGVTI MPPRILPGLD  600
LQPGGTGGGG GGHHLGQLTS MLLGQQPPES SHLGMLAAFQ GGPYGTRGGH HDPQEQQQQM  660
QQHQQQQQQQ SQQQQQQQQQ PDSSRDDSRS SR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1453465SGGGGGGDGGGGS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002970934.10.0transcription factor TCP8
TrEMBLD8RIJ30.0D8RIJ3_SELML; Uncharacterized protein
STRINGEFJ282600.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9221459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-27TCP family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]