PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 439190
Common NameSELMODRAFT_439190
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family bHLH
Protein Properties Length: 731aa    MW: 79156.5 Da    PI: 7.182
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
439190genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08383430455
             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
             +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  439190 383 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 430
             8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-17377447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.24E-11377434No hitNo description
Gene3DG3DSA:4.10.280.106.2E-17379448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663379429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-5383430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10385435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF525181.82E-6648716IPR029061Thiamin diphosphate-binding fold
Gene3DG3DSA:3.40.50.9705.2E-19649716IPR029061Thiamin diphosphate-binding fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MAAVPHVSSA ESLFHEGMDV SHPQALPRVV TTAQQHGFST PMSLDFHDKF TLERSLPSYA  60
SSSFQLVGQS SSSWEPQQQN ADTHFFTSSG NAAAQVLSIH SSHHLTGGEQ HEILVDWQQM  120
GDFASSLGSG GSGLTPSSTT TTATTAQGAA LSDGTMVELI GRIGGCLSTS ASTNSSMRSS  180
PHLLASEAKS GWNSPVEAAS QHHGTHGFIS FGNGNAAAAA TASHLSQAVF ALVDENKDHI  240
RSGVAIPLCQ ADASKLPVVE TKVEASVDDT SGAKSAQETS QASIVKESTG RKRRTLSEDK  300
LKDGSSCVTS SGIKDGEQVK GKRQRNPNAK EESKQHGNGK ADRSSSDNSG STSPKSVKEN  360
TKPPEPPKDY IHVRARRGQA TDSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD  420
EIINYVQSLQ RQVEFLSMKL AAVNPRLEFN VESLLGKEVP HGRASPTNFV LGPQSYSQQL  480
HQAQHSALQL AGFDLRTLTG LQEVAMRRGA FPCLDPYSDP ASQTSSVWDG ELQNIVHMMG  540
FVENGQSLKI ISCNYFVRTA ANQTREEKIT HNTSEEGSVD RISSYSQSRN FPALVISKYQ  600
SSCSTSFGTW KNFGLSWLLE ELIAELRLNF VGCCNELAMR GRKAWELANL PVICIVGGPN  660
SNDYESNRVL HHTIGVADFT QEIACFKQVT CAQVVVKDLE DAHELIDYAI FTCLWRKLAA  720
RKKLWCKASS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5npu_A4e-1461873032172ANC27
5npu_B4e-1461873032172ANC27
5npu_C4e-1461873032172ANC27
5npu_D4e-1461873032172ANC27
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319324KGKRQR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024525565.10.0transcription factor bHLH62
RefseqXP_024525566.10.0transcription factor bHLH62
RefseqXP_024525567.10.0transcription factor bHLH62
RefseqXP_024525568.10.0transcription factor bHLH62
TrEMBLD8R1340.0D8R134_SELML; Uncharacterized protein
STRINGEFJ341950.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.14e-53bHLH family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]