PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_9520V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 455aa    MW: 49423.2 Da    PI: 7.6236
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_9520V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-09259306455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Pp3c6_9520V3.1.p 259 SHSLAERVRREKISERMKFLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 306
                       8**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-16253324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-10253310No hitNo description
Gene3DG3DSA:4.10.280.103.6E-16255322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663255305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-6259306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-9261311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDKLRAVEYP ISLAMDPSIG GQALHEVSTQ HSLQQLSYDP SFAERAAKYS TFGSSNYAQR  60
PQTYSAFDTG KLREMLKNEI KIPRSSSFNR LGNMGTNSDM SQFGEEEMNL KRDEAHPNLE  120
AGLEAIEGAN RARASALNES SDGLSQENSS GSQQTGLQSN RSAAPPRKRK GSSIAEEKGK  180
TSTSSVVSDG KNSKSLEANE QTSLKRQRSG LVKAERSASE NSGDSASPRS LKATSKPPQD  240
LSKQDYIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCSKITG KAVMLDEIIN  300
YVQSLQRQIE FLSMKLAAVN PRLDYSYDLL GKDMLQSRSP ETTLLGPDPL CGYGEMHHGQ  360
VHHSMHMSSG CSLDMRGAES VCDAYLRHSM SMPTLGSLVS ADDFGDPLSQ VCGNGDLQSV  420
VEMGFIQGRQ GLGFGSQVSH GSSLCLSGKL KVEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBM25215497Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379149.10.0transcription factor bHLH74-like isoform X1
RefseqXP_024379151.10.0transcription factor bHLH74-like isoform X1
RefseqXP_024379152.10.0transcription factor bHLH74-like isoform X1
RefseqXP_024379153.10.0transcription factor bHLH74-like isoform X1
TrEMBLA0A2K1KF050.0A0A2K1KF05_PHYPA; Uncharacterized protein
STRINGPP1S270_17V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-53bHLH family protein