PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 438214 | ||||||||
Common Name | SELMODRAFT_438214 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 415aa MW: 44122.9 Da PI: 7.416 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116.6 | 3.2e-36 | 35 | 106 | 2 | 73 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl+ +++ai+++tgt++++a ++ 438214 35 PPKRSSNKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIEWLLRHSEQAIIAATGTGTIPALAM 106 789*************************************************************99998433 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.8E-30 | 40 | 105 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.365 | 41 | 95 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 415 aa Download sequence Send to blast |
MRAANSMDSS STSSIQDPGG GAAPPAAPPP PKKPPPKRSS NKDRHTKVEG RGRRIRMPAT 60 CAARIFQLTR ELGHKSDGET IEWLLRHSEQ AIIAATGTGT IPALAMQSGG LLLRGKPHGM 120 AGLSRSGSST IDQVPRGSTA ESRGMPLGYT AASGVYSPAL PPPPAASSVE RSGLSAPAGY 180 DPTHHHPLMA FQQLGPSSAE HESRPLDPDG EDGDDQGGRF GKRIRADIPS IPMLLGHQLK 240 EDPDGGRRQG HIPSPQPGHI PALWNSPAIW MLPASEQQVW FPSPASSQMF IRAGGLDLPS 300 SALSAMDSSN SNSNSSNPAM GSHNLHHHLL GHMNLSSMQQ PSSSYVLSSM PASSSSIEHG 360 HLGMLSALSA YTRNMTQQQE QQHQHHQDLG EHHGQHHHHQ GRDHSNEDPS SHEQ* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00667 | PBM | Transfer from GSVIVG01027588001 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002962510.1 | 0.0 | transcription factor TCP22 | ||||
TrEMBL | D8QV27 | 0.0 | D8QV27_SELML; Uncharacterized protein | ||||
STRING | EFJ35973 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45680.1 | 3e-37 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 438214 |
Entrez Gene | 9660979 |
Publications ? help Back to Top | |||
---|---|---|---|
|