PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

425336

Common Name

SELMODRAFT_425336

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 356aa MW: 37449 Da PI: 6.7183

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
425336	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	5.1e-12	147	192	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ L+el+P+a K +Ka++L + ++Y+k Lq 425336 147 HSIAERLRREKIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 192 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.45E-17	140	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.34E-13	140	196	No hit	No description
PROSITE profile	PS50888	17.403	142	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.8E-17	144	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-9	147	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-13	148	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0080147	Biological Process	root hair cell development
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MLVAASFQNQ VGGGGAASTS QAGSRNHQGL AATLDHSDNT GQVSSWSHHF VPGNALSFAK 60 LGDGGASSDP NSVKKRYRDE ELQQMYGAAG QMQIDQQQKH QQDQQQRSQA PLAYDSNAPV 120 APVNPPPAGI SARPRVRARR GQATDPHSIA ERLRREKIAE RMKALQELVP NANKTDKASM 180 LDEIIDYVKF LQLQVKVLSM SRLGGAGATM APLVADLPLE GAGQELVSSS QLCRQISVNL 240 SPQDGIALTE HQVARLMEDD MGSAMQYLQS KGLCLMPISL ATSISSCSTK VPTTMSLAAT 300 AAAAAAAGSS PTTAAIAGAL QHATLSDSEA SAMEGCNGRA ATKDFPEQSE EQWLK*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MLVAASFQNQ VGGGGAASTS QAGSRNHQGL AATLDHSDNT GQVSSWSHHF VPGNALSFAK  60
LGDGGASSDP NSVKKRYRDE ELQQMYGAAG QMQIDQQQKH QQDQQQRSQA PLAYDSNAPV  120
APVNPPPAGI SARPRVRARR GQATDPHSIA ERLRREKIAE RMKALQELVP NANKTDKASM  180
LDEIIDYVKF LQLQVKVLSM SRLGGAGATM APLVADLPLE GAGQELVSSS QLCRQISVNL  240
SPQDGIALTE HQVARLMEDD MGSAMQYLQS KGLCLMPISL ATSISSCSTK VPTTMSLAAT  300
AAAAAAAGSS PTTAAIAGAL QHATLSDSEA SAMEGCNGRA ATKDFPEQSE EQWLK*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002986418.2	0.0	transcription factor bHLH7 isoform X1
Swissprot	Q9LSQ3	7e-68	BH082_ARATH; Transcription factor bHLH82
TrEMBL	D8SSS4	0.0	D8SSS4_SELML; Uncharacterized protein
STRING	EFJ12627	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	3e-68	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	425336
Entrez Gene	9648895

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Tam TH,Catarino B,Dolan L Conserved regulatory mechanism controls the development of cells with rooting functions in land plants. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68 [PMID:26150509] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]