PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

404061

Common Name

SELMODRAFT_404061

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

TCP

Protein Properties

Length: 416aa MW: 44269 Da PI: 7.416

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
404061	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.1	2.2e-36	35	106	2	73
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl+ +++ai+++tgt++++a ++ 404061 35 PPKRSSNKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIEWLLRHSEQAIIAATGTGTIPALAM 106 789*************************************************************99998433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.4E-30	40	105	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.365	41	95	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008361	Biological Process	regulation of cell size
GO:0048364	Biological Process	root development
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MRAANSMDSS STSSIQDPGG GAAPPAAPPP PKKPPPKRSS NKDRHTKVEG RGRRIRMPAT 60 CAARIFQLTR ELGHKSDGET IEWLLRHSEQ AIIAATGTGT IPALAMQSGG LLLRGKPHGM 120 AGLSRSGSST IEQVPRSSTA ESRGMPLGYT AASGVYSPAL PPPPAASSVE RSGLSAPAGY 180 DPTAHHHPLM AFQQLGPSSA EHESRPLDPD GEDGDDQGGR FGKRIRADIP SIPMLLGHQL 240 KEDPDGGRRQ GHIPSPQPGH IPALWNSPAI WMLPASEQQV WFPSPASSQM FIRAGGLDLP 300 SSALSAMDSS NSNSNSSNPA MGSHNLHHHL LGHMNLSSMQ QPSSSYVLSS MPASSSSIEH 360 GHLGMLSALS AYTRNMTQQQ EQQHQHHQDL GEHQGQHHHH QGRDHSNEDH SSHEQ*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MRAANSMDSS STSSIQDPGG GAAPPAAPPP PKKPPPKRSS NKDRHTKVEG RGRRIRMPAT  60
CAARIFQLTR ELGHKSDGET IEWLLRHSEQ AIIAATGTGT IPALAMQSGG LLLRGKPHGM  120
AGLSRSGSST IEQVPRSSTA ESRGMPLGYT AASGVYSPAL PPPPAASSVE RSGLSAPAGY  180
DPTAHHHPLM AFQQLGPSSA EHESRPLDPD GEDGDDQGGR FGKRIRADIP SIPMLLGHQL  240
KEDPDGGRRQ GHIPSPQPGH IPALWNSPAI WMLPASEQQV WFPSPASSQM FIRAGGLDLP  300
SSALSAMDSS NSNSNSSNPA MGSHNLHHHL LGHMNLSSMQ QPSSSYVLSS MPASSSSIEH  360
GHLGMLSALS AYTRNMTQQQ EQQHQHHQDL GEHQGQHHHH QGRDHSNEDH SSHEQ*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00667	PBM	Transfer from GSVIVG01027588001	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002962779.1	0.0	transcription factor TCP22
TrEMBL	D8QU57	0.0	D8QU57_SELML; Uncharacterized protein
STRING	EFJ36242	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	2e-37	TCP family protein

Link Out ? help Back to Top
Phytozome	404061
Entrez Gene	9647150

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]