PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 24892
Common NameSELMODRAFT_24890, SELMODRAFT_24892
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family bHLH
Protein Properties Length: 143aa    MW: 15589 Da    PI: 10.1006
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
24892genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.7e-131560555
           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
    HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
           h+++Er RR+ri +++  L++l+P+a      K +Ka++L + v+Y+k Lq
  24892 15 HSIAERLRRERIAERMKALQDLVPNA-----NKTDKASMLDEIVDYVKFLQ 60
           99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.81E-12864No hitNo description
SuperFamilySSF474596.67E-18870IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.3261059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-171170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-101560IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-141665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
RPRVRARRGQ ATDPHSIAER LRRERIAERM KALQDLVPNA NKTDKASMLD EIVDYVKFLQ  60
LQVKVLSMSR LGSAAAVPSL VADLPSEGAN SLLASTLSRS TGISHDGLAS AERQVARLMD  120
EDMGSAMQYL QSKGLCLMPI SLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11924RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002994179.22e-95uncharacterized protein LOC9638016
RefseqXP_024523496.12e-95uncharacterized protein LOC9638016
SwissprotQ9ZUG93e-66BH066_ARATH; Transcription factor bHLH66
TrEMBLD8R3432e-97D8R343_SELML; Uncharacterized protein (Fragment)
STRINGEFJ047693e-98(Selaginella moellendorffii)
STRINGEFJ328793e-98(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.15e-56LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]