PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023584-RA_Salv
Common NameWRKY53
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 492aa    MW: 53544 Da    PI: 6.8362
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023584-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.3e-30166223260
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                            +DgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers   ++++ei+Y+g+H+h+k
  SMil_00023584-RA_Salv 166 EDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-SGHITEIVYKGSHDHPK 223
                            7****************************************.9**************85 PP
2WRKY106.51.3e-33334392159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  SMil_00023584-RA_Salv 334 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 392
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-26153224IPR003657WRKY domain
PROSITE profilePS5081122.607160224IPR003657WRKY domain
SuperFamilySSF1182904.84E-24162224IPR003657WRKY domain
SMARTSM007743.8E-32165223IPR003657WRKY domain
PfamPF031063.9E-23166222IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-37319394IPR003657WRKY domain
SuperFamilySSF1182901.96E-29326394IPR003657WRKY domain
PROSITE profilePS5081138.825329394IPR003657WRKY domain
SMARTSM007743.1E-39334393IPR003657WRKY domain
PfamPF031062.8E-26335392IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
LNLPGLSGAW KISTVLVPGN YMAEPSPTTG SFFKPQMMQS SGENAAILLE KNFASGNAVD  60
ERTSSGFEFR FHTGVSTTSG LSSAGMSIPV GMNRNGLVTH QDQRYSQSAA PSSLASQSHA  120
VARQDSSVYD NIDESNQGAQ SNTGTQASVS EHKDSSSSVS AERTSEDGYN WRKYGQKLVK  180
GSEFPRSYYK CTYPNCEVKK IFERSPSGHI TEIVYKGSHD HPKPQSARRH NPGALMSIQE  240
DKLDKGLSLA GQEDKMNANN MEQSGSPMLS PLQTNEEGID GSGSQFHGQN DDAEDDDPFL  300
KRRKMEDGTD VTPVVKPIRE PRVVVQTVSE VDILDDGYRW RKYGQKVVRG NPNPRSYYKC  360
TNAGCPVRKH VERASHDPKA VITTYEGKHN HDVPIARNSS HEFAASTAYA GTSKMRAHSI  420
SLDLGVGIGP AAGEQKSQEG LDGEAGAGPT QNNQIYEIVN LYGNREAHNF QTPPINASNQ  480
CQQNLGRILM GP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37155394277Probable WRKY transcription factor 4
2lex_A2e-37155394277Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231760.0KM823176.1 Salvia miltiorrhiza WRKY protein (WRKY53) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095503.10.0probable WRKY transcription factor 20
SwissprotQ93WV01e-123WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0D5Y9D00.0A0A0D5Y9D0_SALMI; WRKY protein
STRINGMigut.M01679.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-116WRKY family protein