PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016473-RA_Salv
Common NameWRKY33
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 175aa    MW: 19944.4 Da    PI: 9.7349
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016473-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-3196154159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+++r ++d++vv++tYeg Hnh+
  SMil_00016473-RA_Salv  96 LDDGYKWRKYGQKSVKNSVHPRSYYRCTHHTCNVKKQIQRLSKDNSVVVTTYEGIHNHP 154
                            59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-3283154IPR003657WRKY domain
SuperFamilySSF1182903.4E-2888155IPR003657WRKY domain
PROSITE profilePS5081128.44991156IPR003657WRKY domain
SMARTSM007741.3E-3596155IPR003657WRKY domain
PfamPF031063.6E-2597154IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MEGENFPYFF GSSPFPLSGS STNVLEQSMQ NPSFPSSDQM DLASLLSAGS IEQNPGSTAS  60
REVDQNGSRS KSRFGKKKKY VPQRVAFHTR SEEDILDDGY KWRKYGQKSV KNSVHPRSYY  120
RCTHHTCNVK KQIQRLSKDN SVVVTTYEGI HNHPCEKLME TLSPLLKQLQ FLSRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-2486153774Probable WRKY transcription factor 4
2ayd_A4e-2484153271WRKY transcription factor 1
2lex_A5e-2486153774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231560.0KM823156.1 Salvia miltiorrhiza WRKY protein (WRKY33) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081140.11e-84probable WRKY transcription factor 43
SwissprotQ8VWQ42e-58WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A0D5Y9A21e-128A0A0D5Y9A2_SALMI; WRKY protein
STRINGMigut.A00716.1.p4e-82(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63742433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.14e-60WRKY DNA-binding protein 56