PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G41570.1 | ||||||||
Common Name | ATWRKY24, MBK23.9, WRKY24 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 179aa MW: 20812.5 Da PI: 8.4665 | ||||||||
Description | WRKY DNA-binding protein 24 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.2 | 3e-32 | 97 | 155 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk + +prsYYrCt+++C+vkk+v+r a+dp+vv++tYeg Hnh+ AT5G41570.1 97 LDDGYRWRKYGQKSVKHNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNHP 155 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.5E-32 | 84 | 155 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.97E-28 | 89 | 156 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.011 | 92 | 157 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-37 | 97 | 156 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-25 | 98 | 155 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MDREDINPML SRLDVENNNT FSSFVDKTLM MMPPSTFSGE VEPSSSSSWY PESFHVHAPP 60 LPPENDQIGE KGKELKEKRS RKVPRIAFHT RSDDDVLDDG YRWRKYGQKS VKHNAHPRSY 120 YRCTYHTCNV KKQVQRLAKD PNVVVTTYEG VHNHPCEKLM ETLNPLLRQL QFLSSFSNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-26 | 87 | 154 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 5e-26 | 87 | 154 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.26512 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 262339_at | 1e-101 | ||||
Expression Atlas | AT5G41570 | - | ||||
AtGenExpress | AT5G41570 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | member of WRKY Transcription Factor; Group II-c | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00539 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G41570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q9FFS3 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G41570 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF404864 | 0.0 | AF404864.1 Arabidopsis thaliana WRKY transcription factor 24 (WRKY24) mRNA, complete cds. | |||
GenBank | AK227522 | 0.0 | AK227522.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-13-N18. | |||
GenBank | BT004595 | 0.0 | BT004595.1 Arabidopsis thaliana At5g41570 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_198972.1 | 1e-134 | WRKY DNA-binding protein 24 | ||||
Swissprot | Q9FFS3 | 1e-135 | WRK24_ARATH; Probable WRKY transcription factor 24 | ||||
TrEMBL | Q0WTM6 | 1e-132 | Q0WTM6_ARATH; Uncharacterized protein At5g41570 | ||||
STRING | AT5G41570.1 | 1e-133 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM509 | 28 | 154 | Representative plant | OGRP14 | 17 | 875 |
Link Out ? help Back to Top | |
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Phytozome | AT5G41570.1 |
Entrez Gene | 834159 |
iHOP | AT5G41570 |
wikigenes | AT5G41570 |
Publications ? help Back to Top | |||
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