PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_13527.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bHLH

Protein Properties

Length: 463aa MW: 48191.4 Da PI: 6.297

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_13527.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.5e-12	269	314	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Sme2.5_13527.1_g00001.1 269 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 314 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.40E-13	262	318	No hit	No description
SuperFamily	SSF47459	5.63E-17	262	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	264	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-16	266	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-9	269	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	270	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MQAMNSLLSQ QQQSQMSLQD LQNGGNDGSS GGIIGGLLSQ QIGHSHFDPA SSHDDFLEQI 60 LSSVPSSSPW PDLSKSWDPH HHLSSPPPPL HNPSSGEDQP PPNPLHQQFH FDDQASSLLA 120 SKLRQHQITG GGGAAAKALM LQQQILLSRT LAGNGLRSPT AASGDNGLLS LPVNLSNGDH 180 NDSVSNPAND SSVQALFNGF TGSLGQTSNQ PQHFHHPQGG SMQSQSFGAP AINQTPAASG 240 SAGGGGTTPA AQPKQQRVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA 300 SMLDEIIDYV KFLQLQVKVL SMSRLGGAAA VAPLVADMSS EGGRGEGNVG RVGNGTTSSS 360 NNDTMTVTEQ QVAKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTATCQS RNPMMPNGIG 420 GETGGPTSPS LSALTVQSAT IGNATGAGIH DPSINDVPSL SEA

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MQAMNSLLSQ QQQSQMSLQD LQNGGNDGSS GGIIGGLLSQ QIGHSHFDPA SSHDDFLEQI  60
LSSVPSSSPW PDLSKSWDPH HHLSSPPPPL HNPSSGEDQP PPNPLHQQFH FDDQASSLLA  120
SKLRQHQITG GGGAAAKALM LQQQILLSRT LAGNGLRSPT AASGDNGLLS LPVNLSNGDH  180
NDSVSNPAND SSVQALFNGF TGSLGQTSNQ PQHFHHPQGG SMQSQSFGAP AINQTPAASG  240
SAGGGGTTPA AQPKQQRVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA  300
SMLDEIIDYV KFLQLQVKVL SMSRLGGAAA VAPLVADMSS EGGRGEGNVG RVGNGTTSSS  360
NNDTMTVTEQ QVAKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTATCQS RNPMMPNGIG  420
GETGGPTSPS LSALTVQSAT IGNATGAGIH DPSINDVPSL SEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	273	278	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006343666.1	0.0	PREDICTED: transcription factor bHLH66
Refseq	XP_018625009.1	0.0	PREDICTED: uncharacterized protein LOC104092228
Swissprot	Q9ZUG9	3e-93	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0V0I6Q3	0.0	A0A0V0I6Q3_SOLCH; Putative transcription factor bHLH66-like
STRING	PGSC0003DMT400028917	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	7e-70	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]