PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_09080.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Dof | ||||||||
Protein Properties | Length: 258aa MW: 29384.2 Da PI: 4.325 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.8 | 4.9e-38 | 13 | 72 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+a +cprC stntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk+++s+ Sme2.5_09080.1_g00001.1 13 EQAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRSR 72 67789***************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-27 | 2 | 65 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.2E-32 | 14 | 70 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.621 | 16 | 70 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 18 | 54 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MIMMERTRKS NIEQAPNCPR CASTNTKFCY YNNYSLSQPR YFCKGCRRYW TKGGSLRNVP 60 VGGGCRKSRR SRSTRKDDNT LQTPSPALDA PGAHDIDLAD VFAKYLNQGT TNKDHDDNIV 120 LQESQDYSSI GASLSDSPSS DSFINNPNSF ENESLLDEAI MGNFQDYPCG YFLQEEQGGP 180 INQDFLDFNT SFLEMQAMVG QVEEFDYYNT SNNFEWQPMM QYQDFGSILE LDDQLKNSPT 240 NLASDNHNYS PFDLSNYI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015158674.1 | 1e-148 | PREDICTED: dof zinc finger protein DOF2.1-like | ||||
Swissprot | Q9SVC5 | 3e-40 | DOF35_ARATH; Dof zinc finger protein DOF3.5 | ||||
TrEMBL | M0ZJJ7 | 1e-146 | M0ZJJ7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400002060 | 1e-147 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21340.1 | 3e-36 | Dof family protein |