PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G21340.1 | ||||||||
Common Name | DOF1.2, F24J8.23 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Dof | ||||||||
Protein Properties | Length: 260aa MW: 29678.6 Da PI: 4.4752 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.1 | 3.3e-37 | 38 | 93 | 6 | 61 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rk+ +s AT1G21340.1 38 PACPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNIPVGGGCRKRSRS 93 57**************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-25 | 30 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.286 | 38 | 92 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.8E-31 | 39 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 40 | 76 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MLPYIGHNSY QQHQFPLPEM EIPEKWKLSY EQEAITAPAC PRCASSNTKF CYYNNYSLSQ 60 PRYFCKGCRR YWTKGGSLRN IPVGGGCRKR SRSRQNSHKR FGRNENRPDG LINQDDGFQS 120 SPPGSDIDLA AVFAQYVTDR SPSSTDNTTG SDQDSPITTT THALESLSWD ICQETDVDLG 180 FYGEFNNLTQ KTKEDQEVFG QFLQEDREEI FEFQGLLDDK EIQEILECSF SEEPDQLVSQ 240 GSFMINGDNW SSTDLTRFGI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 93 | KRSRSR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 260925_at | 0.0 | ||||
Expression Atlas | AT1G21340 | - | ||||
AtGenExpress | AT1G21340 | - | ||||
ATTED-II | AT1G21340 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G21340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G21340 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC015447 | 0.0 | AC015447.8 Arabidopsis thaliana chromosome I BAC F24J8 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | DQ446268 | 0.0 | DQ446268.1 Arabidopsis thaliana clone pENTR221-At1g21340 Dof-type zinc finger domain-containing protein (At1g21340) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_173556.1 | 0.0 | Dof-type zinc finger DNA-binding family protein | ||||
Swissprot | P68349 | 0.0 | DOF12_ARATH; Dof zinc finger protein DOF1.2 | ||||
TrEMBL | A0A384LHH8 | 0.0 | A0A384LHH8_ARATH; Uncharacterized protein | ||||
TrEMBL | A0ME79 | 0.0 | A0ME79_ARATH; Uncharacterized protein (Fragment) | ||||
TrEMBL | C0SUW9 | 0.0 | C0SUW9_ARATH; Uncharacterized protein At1g21340 (Fragment) | ||||
STRING | AT1G21340.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6462 | 26 | 43 | Representative plant | OGRP38 | 17 | 445 |
Link Out ? help Back to Top | |
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Phytozome | AT1G21340.1 |
Entrez Gene | 838733 |
iHOP | AT1G21340 |
wikigenes | AT1G21340 |
Publications ? help Back to Top | |||
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