PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT3G52440.1

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Dof

Protein Properties

Length: 247aa MW: 26935.7 Da PI: 4.8921

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT3G52440.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118	3.6e-37	25	81	6	62
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ + AT3G52440.1 25 PSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRPK 81 58***************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	28.63	25	79	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-31	26	79	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	27	63	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-25	27	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MERAEALTSS FIWRPNANAN AEITPSCPRC GSSNTKFCYY NNYSLTQPRY FCKGCRRYWT 60 KGGSLRNVPV GGGCRKSRRP KSSSGNNTKT SLTANSGNPG GGSPSIDLAL VYANFLNPKP 120 DESILQENCD LATTDFLVDN PTGTSMDPSW SMDINDGHHD HYINPVEHIV EECGYNGLPP 180 FPGEELLSLD TNGVWSDALL IGHNHVDVGV TPVQAVHEPV VHFADESNDS TNLLFGSWSP 240 FDFTADG

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	AT3G52440
AtGenExpress	AT3G52440

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00405	DAP	27203113	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT3G52440.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT3G52440

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL050300	0.0	AL050300.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F22O6.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001327531.1	0.0	Dof-type zinc finger DNA-binding family protein
Refseq	NP_190812.1	0.0	Dof-type zinc finger DNA-binding family protein
Swissprot	Q9SVC5	0.0	DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBL	A0A178VGL3	0.0	A0A178VGL3_ARATH; Uncharacterized protein
TrEMBL	C0SVE3	0.0	C0SVE3_ARATH; Dof-type zinc finger DNA-binding family protein (Fragment)
STRING	AT3G52440.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9141	22	38
Representative plant	OGRP38	17	445

Link Out ? help Back to Top
Phytozome	AT3G52440.1
Entrez Gene	824409
iHOP	AT3G52440
wikigenes	AT3G52440

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Yanagisawa S The Dof family of plant transcription factors. Trends Plant Sci., 2002. 7(12): p. 555-60 [PMID:12475498] Lijavetzky D,Carbonero P,Vicente-Carbajosa J Genome-wide comparative phylogenetic analysis of the rice and Arabidopsis Dof gene families. BMC Evol. Biol., 2003. 3: p. 17 [PMID:12877745] Kersten B, et al. Generation of Arabidopsis protein chips for antibody and serum screening. Plant Mol. Biol., 2003. 52(5): p. 999-1010 [PMID:14558660]