PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02649.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 228aa MW: 24672.9 Da PI: 9.7926 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.8e-20 | 16 | 65 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp gk++r++lg+f+taeeAaka++ a+++++g Sme2.5_02649.1_g00005.1 16 HYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAAKAYDSAAREFRG 65 6********.**********8...557************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.0E-14 | 16 | 65 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 16 | 74 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.92 | 16 | 73 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-40 | 16 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-22 | 16 | 74 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.24E-32 | 16 | 73 | No hit | No description |
PRINTS | PR00367 | 1.8E-11 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 39 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016604 | Cellular Component | nuclear body | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAPKGKMNGI VSKEVHYRGV RKRPWGRYAA EIRDPGKKTR VWLGTFDTAE EAAKAYDSAA 60 REFRGVKAKT NFPLLEPEKE QNCKINNEMM NRSPSQSSTV ESSSRDGLSP AVMVDSSSPL 120 DLSIAAAGGF NHSTVGFKLQ NNNPFRSSQI SAGRFAGAAP AVNHMYYLEA LARAGMINLE 180 KKTVDFLGGG VQSESDSSSV IDFMGVDVKR TAGAGLNLDL NLPPPEKM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-22 | 12 | 74 | 1 | 64 | ATERF1 |
3gcc_A | 3e-22 | 12 | 74 | 1 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00358 | DAP | Transfer from AT3G15210 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015089534.1 | 1e-99 | ethylene-responsive transcription factor 4-like | ||||
Refseq | XP_015089545.1 | 1e-99 | ethylene-responsive transcription factor 4-like | ||||
Swissprot | Q40477 | 3e-41 | ERF4_TOBAC; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | M1C387 | 4e-98 | M1C387_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400058751 | 7e-99 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53170.1 | 1e-28 | ethylene response factor 8 |
Publications ? help Back to Top | |||
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